CoNCRAtlas


CoNCRAtlas ID CoMIRGH199
Mature miRNA sequence CAUGUGCCUUGGCUCUCCAUC
Locus D10:4997872-4997956(-)
Alignment 
Displayed Location: D10:4997857-4997973 Strand: -
GGAGAGAGGGUAAGCCAUGCUGGAGAAGCAGGGCACAUGCUAAAUCUAUUAGGCAAAAAUAUUGUCUUUUAUUUUGCAUGUGCCUUGGCUCUCCAUCUUGGAAACUCUCCCUUUGUU
))(.((((((..(((((.(.((((((..((((((((((((.(((..((..((((((.....))))))..)).)))))))))))))))..)))))).).)))...))..)))))).)(
............................................................................CAUGUGCCUUGGCUCUCCAUC.................... ghi-miR164b
....................UGGAGAAGCAGGGCACAUGCU............................................................................ ghi-miR164b*
miRNA family miR164

Expression profile

Tissue specificity indexovule: 0.0083; fiber: 0.5812; shoot apical: 0.0069; ovule and fiber: 0.0109; cotyledon: 0.0003; cotton boll: 0.0595; callus: 0.0021; leaf: 0.0296; anthers: 0.0001; hypocotyls: 0.3011 | Tau: 0.9279

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH18449, CoLNCGH41710, CoLNCGH32832, CoLNCGH32831, CoLNCGH32830, CoLNCGH22563, CoLNCGH02288, CoLNCGH02287, CoLNCGH02286, CoLNCGH22563
Target CDS Gh_A01G033400.1, Gh_D01G030700.1, Gh_A11G035600.1, Gh_D11G035900.1, Gh_A12G201000.1, Gh_D12G194500.1, Gh_D13G169000.1, Gh_A13G167200.1, Gh_A11G324400.1, Gh_D11G325000.1
sORF
Reference
PMID Title
25572837Small RNA sequencing identifies miRNA roles in ovule and fibre development