CoNCRAtlas


CoNCRAtlas ID CoMIRGH196
Mature miRNA sequence UUGUCGCAGGAGAGAUGGCACU
Locus D09:6762863-6762954(-)
Alignment 
Displayed Location: D09:6762846-6762974 Strand: -
AAGAGGAGGUUGGGGGAAUCUUGUCGCAGGAGAGAUGGCACUGAGGGUUUUAUAUAUGAUUUGCUUCCCCCACCCUAGCUUAGCUUAGUGCCGUCGUCUUGUGACAAGAUACCCUUCAAUUUCUCUGUU
.((((.((((((((((.((((((((((((((..((((((((((((((((........((......)).........))))...)))))))))))).)))))))))))))).))).)))))))))))...
....................UUGUCGCAGGAGAGAUGGCACU....................................................................................... ghi-miR3627c
........................................................................................UGCCGUCGUCUUGUGACAAGA.................... ghi-miR3627c*
miRNA family miR3627

Expression profile

Tissue specificity indexovule: 0.0133; fiber: 0.0033; shoot apical: 0.6091; ovule and fiber: 0.0018; cotyledon: 0.0833; cotton boll: 0.0012; callus: 0.0008; leaf: 0.1473; anthers: 0.0904; hypocotyls: 0.0004; seedlings: 0.0491 | Tau: 0.9358
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D0967621496763064-CoLNCGH10969
Target lncRNA CoLNCGH34989, CoLNCGH34988, CoLNCGH34986, CoLNCGH34985, CoLNCGH11438, CoLNCGH04674, CoLNCGH26084, CoLNCGH05846, CoLNCGH35227, CoLNCGH35226
Target CDS Gh_D08G134700.1, Gh_A12G100600.1, Gh_D12G104700.1, Gh_A10G052000.1, Gh_D10G065400.1, Gh_D08G258500.1, Gh_A02G013800.1, Gh_D02G016000.1, Gh_D05G068500.1, Gh_A13G176300.1
sORF
Reference
PMID Title
25572837Small RNA sequencing identifies miRNA roles in ovule and fibre development