| CoNCRAtlas ID | CoMIRGH196 |
|---|---|
| Mature miRNA sequence | UUGUCGCAGGAGAGAUGGCACU |
| Locus | D09:6762863-6762954(-) |
| Alignment | Displayed Location: D09:6762846-6762974 Strand: - AAGAGGAGGUUGGGGGAAUCUUGUCGCAGGAGAGAUGGCACUGAGGGUUUUAUAUAUGAUUUGCUUCCCCCACCCUAGCUUAGCUUAGUGCCGUCGUCUUGUGACAAGAUACCCUUCAAUUUCUCUGUU .((((.((((((((((.((((((((((((((..((((((((((((((((........((......)).........))))...)))))))))))).)))))))))))))).))).)))))))))))... ....................UUGUCGCAGGAGAGAUGGCACU....................................................................................... ghi-miR3627c ........................................................................................UGCCGUCGUCUUGUGACAAGA.................... ghi-miR3627c* |
| miRNA family | miR3627 |
Expression profile
| Tissue specificity index | ovule: 0.0133; fiber: 0.0033; shoot apical: 0.6091; ovule and fiber: 0.0018; cotyledon: 0.0833; cotton boll: 0.0012; callus: 0.0008; leaf: 0.1473; anthers: 0.0904; hypocotyls: 0.0004; seedlings: 0.0491 | Tau: 0.9358 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH34989, CoLNCGH34988, CoLNCGH34986, CoLNCGH34985, CoLNCGH11438, CoLNCGH04674, CoLNCGH26084, CoLNCGH05846, CoLNCGH35227, CoLNCGH35226 |
|---|
| Target CDS | Gh_D08G134700.1, Gh_A12G100600.1, Gh_D12G104700.1, Gh_A10G052000.1, Gh_D10G065400.1, Gh_D08G258500.1, Gh_A02G013800.1, Gh_D02G016000.1, Gh_D05G068500.1, Gh_A13G176300.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 25572837 | Small RNA sequencing identifies miRNA roles in ovule and fibre development |