CoNCRAtlas


CoNCRAtlas ID CoMIRGH192
Mature miRNA sequence ACCGUGUUACUCUGUCUAAUC
Locus D09:50526589-50526757(-)
Alignment 
Displayed Location: D09:50526586-50526728 Strand: -
UUCGGAUCCAGUUCCUUUGUUUGGACAGAGUAAUCACGGUCGAUUUUCUCUUAAUCUAUGUUUGAAUUAUUAUCUCUUUUUUAAACAGAUUUUGUUGAAUCAACCGUGUUACUCUGUCUAAUCAGAUGUAUUGGAUCAUCAAC
....((((((((.(.((((.(((((((((((((.((((((.(((((...(..(((((..(((((((.............))))))))))))..)..))))).))))))))))))))))))).)))).).))))))))......
......................................................................................................ACCGUGUUACUCUGUCUAAUC.................... ghi-miRN36
....................UUGGACAGAGUAAUCACGGUCG..................................................................................................... ghi-miRN36*
miRNA family miRN36

Expression profile

Tissue specificity indexovule: 0.0213; fiber: 0.0587; shoot apical: 0.002; ovule and fiber: 0.0006; cotyledon: 0.0394; cotton boll: 0.0203; callus: 0.492; leaf: 0.3337; anthers: 0.0023; hypocotyls: 0.0039; seedlings: 0.0257 | Tau: 0.8968

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH09596, CoLNCGH09597, CoLNCGH12632, CoLNCGH12633, CoLNCGH12634, CoLNCGH36730, CoLNCGH36729, CoLNCGH46001, CoLNCGH28913, CoLNCGH28914
Target CDS Gh_A02G011500.1, Gh_D02G012500.1, Gh_D12G070400.1, Gh_A02G074300.1, Gh_A02G183500.1, Gh_D03G028800.1, Gh_D12G095500.1, Gh_D02G077400.1, Gh_D01G194200.1, Gh_A05G069500.1
sORF
Reference
PMID Title
No references available