CoNCRAtlas


CoNCRAtlas ID CoMIRGH191
Mature miRNA sequence UCGGACCAGGCUUCAUUCCCC
Locus D09:50509816-50509907(-)
Alignment 
Displayed Location: D09:50509800-50509924 Strand: -
UAAGUCUUCAACAGUUGAGGGGAAUGCUGUCUGGUUCGAGACCAUUCGUCCCGAAGGUCUUGGAAGACUCGGUUUCGAAUGAUCUCGGACCAGGCUUCAUUCCCCCUAACUCCGGAUAUUAUUAC
............(((((.((((((((..(((((((((((((.((((((..((((..((((....))))))))...)))))).)))))))))))))..)))))))).)))))...((.((((((..
....................................................................................UCGGACCAGGCUUCAUUCCCC.................... ghi-miR166k
....................GGAAUGCUGUCUGGUUCGAGA.................................................................................... ghi-miR166k*
miRNA family miR166

Expression profile

Tissue specificity indexovule: 0.0115; fiber: 0.0024; shoot apical: 0.0047; ovule and fiber: 0.024; cotyledon: 0.7873; cotton boll: 0.0141; callus: 0.0008; leaf: 0.0096; anthers: 0.1338; hypocotyls: 0.0081; seedlings: 0.0039 | Tau: 0.973

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH30892, CoLNCGH49394, CoLNCGH30891, CoLNCGH49395, CoLNCGH30892, CoLNCGH04460, CoLNCGH49394, CoLNCGH49395, CoLNCGH30891, CoLNCGH02813
Target CDS Gh_A05G118500.1, Gh_D05G130700.1, Gh_A08G089300.1, Gh_A13G137400.1, Gh_A12G088500.1, Gh_A07G025800.1, Gh_A05G090100.1, Gh_A06G103200.1, Gh_A08G225500.1, Gh_D05G049400.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)