CoNCRAtlas



CoNCRAtlas ID CoMIRGH190
Mature miRNA sequence UGAAGCUGCCAGCAUGAUCUCA
Locus D09:50213732-50213921(+)
Alignment
Displayed Location: D09:50213811-50213922 Strand: +
UAUGGUGCUCCAACAUCAGAUGAAGCUGCCAGCAUGAUCUCAAUUUCCCUCUGUUUUAUCGAGGAAAAAUCAGAUCAUGUGGCAGUUUCACCUGUUGCUGCUUGCACCCCCA
)..(((((..((.((.(((.(((((((((((.((((((((...(((.((((.........)))).)))...))))))))))))))))))).))).)).))...))))).)))
....................UGAAGCUGCCAGCAUGAUCUCA...................................................................... ghi-miR167e
.......................................................................AGAUCAUGUGGCAGUUUCACC.................... ghi-miR167e*
miRNA family miR167

Expression profile

Tissue specificity indexovule: 0.0869; fiber: 0.1419; shoot apical: 0.0444; ovule and fiber: 0.4395; cotyledon: 0.0023; cotton boll: 0.0156; callus: 0.0003; leaf: 0.0167; anthers: 0.2474; hypocotyls: 0.0029; seedlings: 0.0021 | Tau: 0.8724
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D095021348950218099+CoLNCGH12623
D095021365850218099+CoLNCGH12624
D095021370250217074+CoLNCGH12625
D095021370950217074+CoLNCGH12626
Target lncRNA CoLNCGH06214, CoLNCGH28913, CoLNCGH28914, CoLNCGH06213, CoLNCGH06553, CoLNCGH06554, CoLNCGH06555, CoLNCGH06556, CoLNCGH06557, CoLNCGH06558
Target CDS Gh_A06G203700.1, Gh_D06G208800.1, Gh_D06G208800.2, Gh_D09G091900.1, Gh_A02G146600.1, Gh_A02G146600.2, Gh_D03G081200.1, Gh_D13G114900.1, Gh_A02G013100.1, Gh_A04G062800.2
sORF
Reference
PMID Title
22160515Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity