CoNCRAtlas


CoNCRAtlas ID CoMIRGH189
Mature miRNA sequence UUUGGAUUGAAGGGAGCUCUA
Locus D09:45983553-45983841(-)
Alignment 
Displayed Location: D09:45983586-45983791 Strand: -
AAGGUGGGGGGUUAGGAAUGGAGCUCCUUGAAGUCCAAUAGAGUUUCUUGCUGGGUAUAUUGAGCUGCUUGGCUAUGGAUCCCACAGUCCUAUCCCAUGUUGGGAGGGAUAGGCUUGCGGCUUCCAUAUCUCAGGAGCUUCAUUACCUUUAAAGUUAGAUCCUUGUUUGGAUUGAAGGGAGCUCUACAUCUUUCUCCUUUCUCACU
((....(((((..(((..(((((((((((..(((((((..(((..(((.((((((((....(((((.((.((.((((((..((.(((.((((((((.........)))))))).))).))..)))))).)).)).)))))...)))))....))).)))..)))..)))))))..)))))))))))..)))..))))))))).)))
.....................................................................................................................................................................UUUGGAUUGAAGGGAGCUCUA.................... ghi-miR159b
....................GAGCUCCUUGAAGUCCAAUAG..................................................................................................................................................................... ghi-miR159b*
miRNA family miR159

Expression profile

Tissue specificity indexovule: 0.3778; fiber: 0.08; shoot apical: 0.0081; ovule and fiber: 0.0066; cotyledon: 0.1469; cotton boll: 0.0462; callus: 0.0001; leaf: 0.1259; anthers: 0.0116; hypocotyls: 0.0111; seedlings: 0.1857 | Tau: 0.8353
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D094598268445984330-CoLNCGH12401
D094598303145984517-CoLNCGH12402
D094598312345984330-CoLNCGH12403
D094598278845984786-CoLNCGH12404
D094598279745984517-CoLNCGH12405
D094598281945984786-CoLNCGH12406
D094598286245984517-CoLNCGH12407
D094598288045984786-CoLNCGH12408
D094598295045984786-CoLNCGH12409
D094598300045984786-CoLNCGH12410
D094598302745984517-CoLNCGH12411
D094598286245984466+CoLNCGH12412
Target lncRNA CoLNCGH12412, CoLNCGH12412, CoLNCGH09840, CoLNCGH09841, CoLNCGH20575, CoLNCGH11516, CoLNCGH11517, CoLNCGH28536, CoLNCGH28541, CoLNCGH01407
Target CDS Gh_D09G186900.1, Gh_D13G158800.1, Gh_A13G155800.1, Gh_A08G159900.1, Gh_A11G028100.1, Gh_A11G028100.2, Gh_D11G028400.1, Gh_D11G028400.2, Gh_D08G041100.1, Gh_D06G218200.1
sORF
Reference
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PMID Title