| CoNCRAtlas ID | CoMIRGH189 |
|---|---|
| Mature miRNA sequence | UUUGGAUUGAAGGGAGCUCUA |
| Locus | D09:45983553-45983841(-) |
| Alignment | Displayed Location: D09:45983586-45983791 Strand: - AAGGUGGGGGGUUAGGAAUGGAGCUCCUUGAAGUCCAAUAGAGUUUCUUGCUGGGUAUAUUGAGCUGCUUGGCUAUGGAUCCCACAGUCCUAUCCCAUGUUGGGAGGGAUAGGCUUGCGGCUUCCAUAUCUCAGGAGCUUCAUUACCUUUAAAGUUAGAUCCUUGUUUGGAUUGAAGGGAGCUCUACAUCUUUCUCCUUUCUCACU ((....(((((..(((..(((((((((((..(((((((..(((..(((.((((((((....(((((.((.((.((((((..((.(((.((((((((.........)))))))).))).))..)))))).)).)).)))))...)))))....))).)))..)))..)))))))..)))))))))))..)))..))))))))).))) .....................................................................................................................................................................UUUGGAUUGAAGGGAGCUCUA.................... ghi-miR159b ....................GAGCUCCUUGAAGUCCAAUAG..................................................................................................................................................................... ghi-miR159b* |
| miRNA family | miR159 |
Expression profile
| Tissue specificity index | ovule: 0.3778; fiber: 0.08; shoot apical: 0.0081; ovule and fiber: 0.0066; cotyledon: 0.1469; cotton boll: 0.0462; callus: 0.0001; leaf: 0.1259; anthers: 0.0116; hypocotyls: 0.0111; seedlings: 0.1857 | Tau: 0.8353 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH12412, CoLNCGH12412, CoLNCGH09840, CoLNCGH09841, CoLNCGH20575, CoLNCGH11516, CoLNCGH11517, CoLNCGH28536, CoLNCGH28541, CoLNCGH01407 |
|---|
| Target CDS | Gh_D09G186900.1, Gh_D13G158800.1, Gh_A13G155800.1, Gh_A08G159900.1, Gh_A11G028100.1, Gh_A11G028100.2, Gh_D11G028400.1, Gh_D11G028400.2, Gh_D08G041100.1, Gh_D06G218200.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |