CoNCRAtlas


CoNCRAtlas ID CoMIRGH188
Mature miRNA sequence AAGCUCAGGAGGGAUAGCGCC
Locus D09:45169471-45169556(+)
Alignment 
Displayed Location: D09:45169463-45169574 Strand: +
UAAGUAUAGAAGAAUCUGUUAAGCUCAGGAGGGAUAGCGCCAUGGAUGAUCUUCAGCCUGAUCCUCAUUAGCGCUAUCCAUCCUGAGUUACAUGGCUUCUUCUUGCUCUUGC
.......(((((((.((((..(((((((((.(((((((((.(..((.((((........)))).))..).))))))))).)))))))))..)))).)))))))(((....))
....................AAGCUCAGGAGGGAUAGCGCC....................................................................... ghi-miR390e
.......................................................................CGCUAUCCAUCCUGAGUUcCA.................... ghi-miR390e*
miRNA family miR390

Expression profile

Tissue specificity indexovule: 0.1539; fiber: 0.2647; cotyledon: 0.0215; cotton boll: 0.064; callus: 0.2665; leaf: 0.0164; hypocotyls: 0.1039; seedlings: 0.1092 | Tau: 0.7248
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D094516941845170080+CoLNCGH12362
D094516914945172230+CoLNCGH12360
D094516941045170853+CoLNCGH12361
D094516941945172230+CoLNCGH12363
Target lncRNA CoLNCGH36101, CoLNCGH36101, CoLNCGH51032, CoLNCGH39098, CoLNCGH39099, CoLNCGH51039, CoLNCGH39097, CoLNCGH51037, CoLNCGH51038, CoLNCGH51036
Target CDS Gh_A10G130900.1, Gh_D10G143800.1, Gh_A11G274300.1, Gh_D11G273000.1, Gh_D07G206900.1, Gh_A11G349100.1, Gh_A11G274300.1, Gh_A11G283800.1, Gh_D11G283600.1, Gh_D11G273000.1
sORF
Reference
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PMID Title