| CoNCRAtlas ID | CoMIRGH188 |
|---|---|
| Mature miRNA sequence | AAGCUCAGGAGGGAUAGCGCC |
| Locus | D09:45169471-45169556(+) |
| Alignment | Displayed Location: D09:45169463-45169574 Strand: +
UAAGUAUAGAAGAAUCUGUUAAGCUCAGGAGGGAUAGCGCCAUGGAUGAUCUUCAGCCUGAUCCUCAUUAGCGCUAUCCAUCCUGAGUUACAUGGCUUCUUCUUGCUCUUGC
.......(((((((.((((..(((((((((.(((((((((.(..((.((((........)))).))..).))))))))).)))))))))..)))).)))))))(((....))
....................AAGCUCAGGAGGGAUAGCGCC....................................................................... ghi-miR390e
.......................................................................CGCUAUCCAUCCUGAGUUcCA.................... ghi-miR390e*
|
| miRNA family | miR390 |
Expression profile
| Tissue specificity index | ovule: 0.1539; fiber: 0.2647; cotyledon: 0.0215; cotton boll: 0.064; callus: 0.2665; leaf: 0.0164; hypocotyls: 0.1039; seedlings: 0.1092 | Tau: 0.7248 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH36101, CoLNCGH36101, CoLNCGH51032, CoLNCGH39098, CoLNCGH39099, CoLNCGH51039, CoLNCGH39097, CoLNCGH51037, CoLNCGH51038, CoLNCGH51036 |
|---|
| Target CDS | Gh_A10G130900.1, Gh_D10G143800.1, Gh_A11G274300.1, Gh_D11G273000.1, Gh_D07G206900.1, Gh_A11G349100.1, Gh_A11G283800.1, Gh_D11G283600.1, Gh_A11G274300.1, Gh_D11G273000.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |