CoNCRAtlas


CoNCRAtlas ID CoMIRGH185
Mature miRNA sequence UUGACAGAAGAUAGAGAGCAC
Locus D09:24691436-24691718(+)
Alignment 
Displayed Location: D09:24691483-24691617 Strand: +
GAGGCAAUUGGUGAUUGUUGUUGACAGAAGAUAGAGAGCACAGAUGAUGGUGUGCAAUUAGGAGUCUUGAAGCAAUGCAUCCCACUCCUUUGUGCUCUUUAUGCUUCUGUCAUCACCUUCAAGCCACUCUUACCU
(((((....(((((.......(((((((((((((((((((((((.(((((.(((((.(((((...))))).....))))).))).)).)))))))))))))).)))))))))))))).....)))..))))..))
....................UUGACAGAAGAUAGAGAGCAC.............................................................................................. ghi-miR156o
.............................................................................................GCUCUUUAUGCUUCUGUCAUCA.................... ghi-miR156o*
miRNA family miR156

Expression profile

Tissue specificity indexovule: 0.0004; fiber: 0.0136; shoot apical: 0.2358; ovule and fiber: 0.028; cotyledon: 0.0162; callus: 0.0004; leaf: 0.0969; anthers: 0.0704; hypocotyls: 0.5316; seedlings: 0.0068 | Tau: 0.9119
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D092469129824696127+CoLNCGH11549
D092469130524696127+CoLNCGH11550
Target lncRNA CoLNCGH44573, CoLNCGH44572, CoLNCGH44573, CoLNCGH44572, CoLNCGH38244, CoLNCGH14404, CoLNCGH14403, CoLNCGH28903, CoLNCGH15626, CoLNCGH15625
Target CDS Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2, Gh_A01G173100.3, Gh_D04G208500.1, Gh_A04G164100.1, Gh_A11G360800.1
sORF
Reference
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PMID Title