CoNCRAtlas


CoNCRAtlas ID CoMIRGH183
Mature miRNA sequence UUCGGACCAGGCUUCAUUCCC
Locus D08:7932256-7932365(+)
Alignment 
Displayed Location: D08:7932267-7932382 Strand: +
GUAACAUGAACUGUUGCGGGGAAUGUUGUCUGGUUCGAAGUCAUUCAUAUGAAACUUAAUUGUCUUUUGAAUGAUUUCGGACCAGGCUUCAUUCCCCCCAACUUGGUUUAAUAGCU
(.....((((((((((.((((((((..((((((((((((((((((((...((..........))...))))))))))))))))))))..)))))))).))))..))))))...(((
...........................................................................UUCGGACCAGGCUUCAUUCCC.................... ghi-miR166j
....................GAAUGUUGUCUGGUUCGAAGU........................................................................... ghi-miR166j*
miRNA family miR166

Expression profile

Tissue specificity indexovule: 0.0018; fiber: 0.0084; shoot apical: 0.957; ovule and fiber: 0.0002; cotyledon: 0.0032; cotton boll: 0.0067; callus: 0.0013; leaf: 0.0151; anthers: 0.0017; hypocotyls: 0.002; seedlings: 0.0025 | Tau: 0.9955

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH30892, CoLNCGH49394, CoLNCGH30891, CoLNCGH49395, CoLNCGH30892, CoLNCGH49394, CoLNCGH49395, CoLNCGH30891, CoLNCGH09051, CoLNCGH07833
Target CDS Gh_A05G118500.1, Gh_D05G130700.1, Gh_A08G089300.1, Gh_A13G137400.1, Gh_A07G025800.1, Gh_A05G090100.1, Gh_A06G103200.1, Gh_A08G225500.1, Gh_D05G049400.1, Gh_D05G102000.1
sORF
Reference
PMID Title
No references available