CoNCRAtlas


CoNCRAtlas ID CoMIRGH182
Mature miRNA sequence UUCCACAGCUUUCUUGAACUU
Locus D08:67378095-67378222(-)
Alignment 
Displayed Location: D08:67378086-67378233 Strand: -
UAAAAGUUCUGGCCAUGCUUUUCCACAGCUUUCUUGAACUUUCUUUGUGUACUUGUUUGCAUGUAUGUAUGAAGCUACCAAAGGUUUAGAUAGAGGACACCAUGGGAGCUCAAGAAAGCUGUGGGAGAAGAUGGCAACGUCUCAGGAC
...(((((((((((((..(((((((((((((((((((.(((((...((((.(((..((...........((((.((.....)).))))))..))).))))...))))).)))))))))))))))))))..))))).......))))))
....................UUCCACAGCUUUCUUGAACUU........................................................................................................... ghi-miR396h
...........................................................................................................GCUCAAGAAAGCUGUGGGAGA.................... ghi-miR396h*
miRNA family miR396

Expression profile

Tissue specificity indexovule: 0.0008; fiber: 0.0226; shoot apical: 0.0118; cotyledon: 0.2716; cotton boll: 0.0035; callus: 0.0014; leaf: 0.2047; anthers: 0.0157; seedlings: 0.4679 | Tau: 0.8863
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D086737251967378462-CoLNCGH10733
D086737253467378462-CoLNCGH10735
D086737278667378462-CoLNCGH10736
Target lncRNA CoLNCGH34024, CoLNCGH20999, CoLNCGH20999, CoLNCGH46770, CoLNCGH46769, CoLNCGH46770, CoLNCGH20997, CoLNCGH20998, CoLNCGH34025, CoLNCGH34024
Target CDS Gh_D13G231200.1, Gh_D07G043100.1, Gh_A11G180600.1, Gh_A02G132900.1, Gh_A10G111800.1, Gh_D10G161900.1, Gh_D07G043100.1, Gh_D13G228800.1, Gh_A12G255200.1, Gh_D12G249500.1
sORF
Reference
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PMID Title