| CoNCRAtlas ID | CoMIRGH182 |
|---|---|
| Mature miRNA sequence | UUCCACAGCUUUCUUGAACUU |
| Locus | D08:67378095-67378222(-) |
| Alignment | Displayed Location: D08:67378086-67378233 Strand: - UAAAAGUUCUGGCCAUGCUUUUCCACAGCUUUCUUGAACUUUCUUUGUGUACUUGUUUGCAUGUAUGUAUGAAGCUACCAAAGGUUUAGAUAGAGGACACCAUGGGAGCUCAAGAAAGCUGUGGGAGAAGAUGGCAACGUCUCAGGAC ...(((((((((((((..(((((((((((((((((((.(((((...((((.(((..((...........((((.((.....)).))))))..))).))))...))))).)))))))))))))))))))..))))).......)))))) ....................UUCCACAGCUUUCUUGAACUU........................................................................................................... ghi-miR396h ...........................................................................................................GCUCAAGAAAGCUGUGGGAGA.................... ghi-miR396h* |
| miRNA family | miR396 |
Expression profile
| Tissue specificity index | ovule: 0.0008; fiber: 0.0226; shoot apical: 0.0118; cotyledon: 0.2716; cotton boll: 0.0035; callus: 0.0014; leaf: 0.2047; anthers: 0.0157; seedlings: 0.4679 | Tau: 0.8863 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH34024, CoLNCGH20999, CoLNCGH20999, CoLNCGH46770, CoLNCGH46769, CoLNCGH46770, CoLNCGH20997, CoLNCGH20998, CoLNCGH34025, CoLNCGH34024 |
|---|
| Target CDS | Gh_D13G231200.1, Gh_D07G043100.1, Gh_A11G180600.1, Gh_A02G132900.1, Gh_A10G111800.1, Gh_D10G161900.1, Gh_D07G043100.1, Gh_D13G228800.1, Gh_A12G255200.1, Gh_D12G249500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 25572837 | Small RNA sequencing identifies miRNA roles in ovule and fibre development |