CoNCRAtlas


CoNCRAtlas ID CoMIRGH181
Mature miRNA sequence CGCUAUCUAUCCUGAGUUUCA
Locus D08:63310128-63310313(+)
Alignment 
Displayed Location: D08:63310132-63310261 Strand: +
CGAGUAUGGGAGAAUCUGUAAAGCUCAGGAGGGAUAGCGCCUAAGCUAUUUCUUUCUUUCUUUCUUUUUUGCAGAAAUAUCAUCUGCGGCGCUAUCUAUCCUGAGUUUCAUGGGUUCUUCCUGCUAUAUG
..((((.((((((((((((.((((((((((.((((((((((.(((......)))................(((((.......))))))))))))))).)))))))))).)))))))))))))))).((((
.........................................................................................CGCUAUCUAUCCUGAGUUUCA.................... ghi-miRN34
....................AAGCUCAGGAGGGAUAGCGCC......................................................................................... ghi-miRN34*
miRNA family miRN34

Expression profile

Tissue specificity indexovule: 0.2916; fiber: 0.0057; shoot apical: 0.1998; ovule and fiber: 0.4733; cotyledon: 0.0008; cotton boll: 0.0039; callus: 0.0002; leaf: 0.0227; anthers: 0.0007; hypocotyls: 0.0011; seedlings: 0.0003 | Tau: 0.8887

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH36101, CoLNCGH36101, CoLNCGH51032, CoLNCGH39098, CoLNCGH39099, CoLNCGH51039, CoLNCGH39097, CoLNCGH51037, CoLNCGH51038, CoLNCGH51036
Target CDS Gh_A10G130900.1, Gh_D10G143800.1, Gh_A11G274300.1, Gh_D11G273000.1, Gh_D07G206900.1, Gh_A11G349100.1, Gh_A11G283800.1, Gh_D11G283600.1, Gh_A11G274300.1, Gh_D11G273000.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)