CoNCRAtlas


CoNCRAtlas ID CoMIRGH178
Mature miRNA sequence UCGCUUGGUGCAGGUCGGGAA
Locus D08:53845099-53845329(-)
Alignment 
Displayed Location: D08:53845098-53845267 Strand: -
AGUUACUGGCGGUCUCUAAUUCGCUUGGUGCAGGUCGGGAACUGAUUGGCUGUACCUUAAUAUUGGAUUGAAUUUUAUUUUGAUUUAAGCCAGAUGGCGGGGCGUGAUUGGAGGAAGCGCGAAUCGGAUCCCGCCUUGCAUCAACUGAAUCGGAGACCGCGGUGAAGGUU
)))(((((.((((((((.(((((.((((((((((.(((((.((((((.((..(.((((.....(((.(((((((.......))))))).)))(((.(((...))).))).)))).)..)).)))))).))))).)))))))))).))))).)))))))))))))((((((
....................UCGCUUGGUGCAGGUCGGGAA................................................................................................................................. ghi-mir168b
.................................................................................................................................CCCGCCUUGCAUCAACUGAAU.................... ghi-mir168b*
miRNA family mir168

Expression profile

Tissue specificity indexovule: 0.0103; fiber: 0.079; shoot apical: 0.1918; ovule and fiber: 0.0404; cotyledon: 0.0124; cotton boll: 0.0087; callus: 0.0237; leaf: 0.1281; anthers: 0.0739; hypocotyls: 0.419; seedlings: 0.0126 | Tau: 0.8613

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH19161, CoLNCGH19160, CoLNCGH19162, CoLNCGH19163, CoLNCGH14308, CoLNCGH14309, CoLNCGH17748, CoLNCGH15201, CoLNCGH15202, CoLNCGH34341
Target CDS Gh_D09G183200.1, Gh_A12G299600.1, Gh_A12G299600.2, Gh_D12G293300.1, Gh_D12G293300.2, Gh_Contig00641G001900.2, Gh_Contig00641G001900.1, Gh_D12G268200.1, Gh_D13G047700.1, Gh_A13G045300.1
sORF
Reference
PMID Title
No references available