CoNCRAtlas


CoNCRAtlas ID CoMIRGH177
Mature miRNA sequence UUUGCAUGAACUAGGAGACGU
Locus D08:49269299-49269481(-)
Alignment 
Displayed Location: D08:49269323-49269447 Strand: -
GGGAAAUGACGGUAGGCUACGGCUGCUAGUUCAUGGAUGCCCUUGGAUGCGUAAAAAUGGGCUCGAGGGGUUCGCAGCUGAGGGUUUGCAUGAACUAGGAGACGUUGUUGCCUUCAUCUUUUUGG
((((..(((.(((((.(.(((.((.((((((((((.(.((((((((.((((........(((((...))))))))).)))))))).).)))))))))).)).))).)))))).))))))))))))
....................................................................................UUUGCAUGAACUAGGAGACGU.................... ghi-miR1383b
....................GGCUGCUAGUUCAUGGAUGCC.................................................................................... ghi-miR1383b*
miRNA family miR1383

Expression profile

Tissue specificity indexovule: 0.0003; fiber: 0.0066; shoot apical: 0.0101; ovule and fiber: 0.0008; cotyledon: 0.0004; cotton boll: 0.0093; callus: 0.0006; leaf: 0.8188; anthers: 0.0004; hypocotyls: 0.1523; seedlings: 0.0004 | Tau: 0.9779

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH15360, CoLNCGH46600, CoLNCGH15359, CoLNCGH15358, CoLNCGH08501, CoLNCGH01099, CoLNCGH05797, CoLNCGH15357, CoLNCGH23734, CoLNCGH07403
Target CDS Gh_A11G372500.1, Gh_A11G372500.2, Gh_D08G101000.2, Gh_A08G097400.1, Gh_D08G101000.1, Gh_D11G380700.1, Gh_A05G210200.1, Gh_D05G226900.1, Gh_A11G145400.1, Gh_D11G146600.1
sORF
Reference
PMID Title
No references available