CoNCRAtlas


CoNCRAtlas ID CoMIRGH175
Mature miRNA sequence GGAAGGUUUGGAGGAGAUUGA
Locus D08:42279270-42279505(-)
Alignment 
Displayed Location: D08:42279405-42279522 Strand: -
UUAGAAGGAAUCGGUUGCUCAAUCUCCCUCAAACGCUUCCAGCAAUAUGCUACACACUACUCCCCAGCAGUACUGCUGGAAGGUUUGGAGGAGAUUGAACAAAACAUGCCUUGAUGAU
((..((((......(((.(((((((((.((((((.(((((((((...((((..............))))....))))))))))))))).))))))))).)))......)))).((.((
.............................................................................GGAAGGUUUGGAGGAGAUUGA.................... ghi-miR1449c
....................AAUCUCCCUCAAACGCUUCCAG............................................................................ ghi-miR1449c*
miRNA family miR1449

Expression profile

Tissue specificity indexovule: 0.0025; fiber: 0.1492; shoot apical: 0.1706; ovule and fiber: 0.0057; cotyledon: 0.0065; cotton boll: 0.0559; leaf: 0.2583; anthers: 0.0418; hypocotyls: 0.2961; seedlings: 0.0133 | Tau: 0.7623
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D084227600342279566-CoLNCGH09808
D084227641242279566-CoLNCGH09809
D084227641742279566-CoLNCGH09810
Target lncRNA CoLNCGH33221, CoLNCGH33220, CoLNCGH33222, CoLNCGH10403, CoLNCGH32860, CoLNCGH32859, CoLNCGH26010, CoLNCGH26011, CoLNCGH26012, CoLNCGH34362
Target CDS Gh_A05G060400.1, Gh_D05G075600.1, Gh_A08G174100.1, Gh_A11G298100.1, Gh_D11G298200.1, Gh_A01G251500.1, Gh_A13G113500.1, Gh_D08G213800.1, Gh_D06G175400.1, Gh_A07G090300.1
sORF
Reference
PMID Title
28327647MicroRNA expression profiles during cotton (Gossypium hirsutum L) fiber early development