| CoNCRAtlas ID | CoMIRGH173 |
|---|---|
| Mature miRNA sequence | CGAGCCGAAUCAAUAUCACUC |
| Locus | D08:35929162-35929240(+) |
| Alignment | Displayed Location: D08:35929144-35929259 Strand: + ACUGGAGGAGUAGACAUGGCGUGAUAUUGCUUCGGCUCAUCUUCUUUCUCAGUAAUCCGUCUGAAAGUUUCAAGGCGAGCCGAAUCAAUAUCACUCUUGUAUGCUUCUUUCUCAUG ((((((((((((.(((.((.(((((((((.((((((((.(((((((..((((........)))))))....)))).)))))))).))))))))))).))).))))))))(((((.( ...........................................................................CGAGCCGAAUCAAUAUCACUC.................... ghi-miR171i ....................GUGAUAUUGCUUCGGCUCAUC........................................................................... ghi-miR171i* |
| miRNA family | miR171 |
Expression profile
| Tissue specificity index | ovule: 0.0008; fiber: 0.05; shoot apical: 0.3651; cotyledon: 0.0156; cotton boll: 0.0018; callus: 0.0008; leaf: 0.1589; anthers: 0.0922; hypocotyls: 0.291; seedlings: 0.0238 | Tau: 0.8261 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH44504, CoLNCGH42258, CoLNCGH42259, CoLNCGH42260, CoLNCGH42261, CoLNCGH17199, CoLNCGH13022, CoLNCGH44504, CoLNCGH27628, CoLNCGH44612 |
|---|
| Target CDS | Gh_A06G047700.1, Gh_D06G047200.1, Gh_D05G234400.1, Gh_A05G217600.1, Gh_A02G199300.1, Gh_D04G135400.1, Gh_D04G135400.2, Gh_D05G066900.1, Gh_A05G050900.1, Gh_D13G083400.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |