CoNCRAtlas


CoNCRAtlas ID CoMIRGH172
Mature miRNA sequence UUCCCAAAACCUCCAAUUCCAA
Locus D07:9306821-9307035(+)
Alignment 
Displayed Location: D07:9306895-9307009 Strand: +
UGAAGUUUCUGGAAAUUAUAGGAAUCGCGUUUUUGGGAAGAAGCACGAUCGAUCUGCAUCCGCCACUAUUUUCUUCCCAAAACCUCCAAUUCCAAUGAUUUCCAGAAACUUUUCC
.((((((((((((((((((.(((((.(.(.(((((((((((((((.((....))))).............)))))))))))).).)..))))).)))))))))))))))))))))
.........................................................................UUCCCAAAACCUCCAAUUCCAA.................... ghi-miR482f
....................GGAAUCGCGUUUUUGGGAAGA.......................................................................... ghi-miR482f*
miRNA family miR482

Expression profile

Tissue specificity indexovule: 0.0389; fiber: 0.1173; shoot apical: 0.0274; ovule and fiber: 0.0441; cotyledon: 0.1574; cotton boll: 0.0717; callus: 0.0441; leaf: 0.2078; anthers: 0.038; hypocotyls: 0.0287; seedlings: 0.2246 | Tau: 0.6547

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH44621, CoLNCGH44620, CoLNCGH44619, CoLNCGH44618, CoLNCGH06119, CoLNCGH06120, CoLNCGH06122, CoLNCGH06123, CoLNCGH06124, CoLNCGH06125
Target CDS Gh_D03G173900.1, Gh_D13G228300.1, Gh_D04G178800.1, Gh_D04G178900.1, Gh_A04G139900.1, Gh_A04G140000.1, Gh_D04G179100.1, Gh_A11G261700.1, Gh_D11G265000.1, Gh_A11G261600.1
sORF
Reference
PMID Title
25572837Small RNA sequencing identifies miRNA roles in ovule and fibre development