CoNCRAtlas


CoNCRAtlas ID CoMIRGH170
Mature miRNA sequence UGAUUGAGCCGUGCCAAUAUC
Locus D07:58319704-58319957(+)
Alignment 
Displayed Location: D07:58319742-58319854 Strand: +
AUAUUGAGUUGAGAUUUUUAUGUUGGCACGGUUCAGUCAGAUCAAAUCUCUCGGUGGCUGAGUCGUUUAGUCUGAUUGAGCCGUGCCAAUAUCACCUUGACUCGCCAUAUCUG
(((((((((((((......(((((((((((((((((((((((.((((..(((((...)))))..)))).)))))))))))))))))))))))...)))))))))..))))).(
........................................................................UGAUUGAGCCGUGCCAAUAUC.................... ghi-miR171h
....................UGUUGGCACGGUUCAcUCAGA........................................................................ ghi-miR171h*
miRNA family miR171

Expression profile

Tissue specificity indexovule: 0.083; fiber: 0.0234; shoot apical: 0.2152; ovule and fiber: 0.1419; cotyledon: 0.0249; cotton boll: 0.019; callus: 0.0236; leaf: 0.2309; anthers: 0.2088; hypocotyls: 0.0288; seedlings: 0.0006 | Tau: 0.6668

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH17852, CoLNCGH26838, CoLNCGH36571, CoLNCGH36570, CoLNCGH29016, CoLNCGH36569, CoLNCGH36568, CoLNCGH36571, CoLNCGH36570, CoLNCGH36569
Target CDS Gh_D12G109400.1, Gh_A12G109700.1, Gh_A08G196200.1, Gh_D08G192900.1, Gh_A12G245400.1, Gh_D12G239800.1, Gh_A03G014800.1, Gh_D03G180900.1, Gh_A12G109800.1, Gh_D12G109500.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)