CoNCRAtlas


CoNCRAtlas ID CoMIRGH168
Mature miRNA sequence UGCCUGGCUCCCUGAAUGCCA
Locus D07:52521814-52521923(-)
Alignment 
Displayed Location: D07:52521797-52521931 Strand: -
AUGAAACAAUGGAAAUGAUCUGCCUGGCUCCCUGAAUGCCAACUAUGGAUGGUGUCAAAUAAGCGGUGUUCUGUUGUUGGCCCUUUCCUAGUUGGCAUCAGAGGACUCAGGCAGGUCUAUCCUUUUUAUCAUCUU
((((......(((...(((((((((((.(((((((.(((((((((.(((.((.(((((...(((((....))))).)))))))..)))))))))))))))).))).)))))))))))..)))......)))))))
....................UGCCUGGCUCCCUGAAUGCCA.............................................................................................. ghi-miR160d
..............................................................................................GCAUCAGAGGACUCAGGCAGG.................... ghi-miR160d*
miRNA family miR160

Expression profile

Tissue specificity indexovule: 0.7082; fiber: 0.127; shoot apical: 0.0219; ovule and fiber: 0.0111; cotyledon: 0.005; cotton boll: 0.0498; callus: 0.0043; leaf: 0.0487; anthers: 0.0201; hypocotyls: 0.004 | Tau: 0.9588

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH03813, CoLNCGH27436, CoLNCGH25995, CoLNCGH25994, CoLNCGH03815, CoLNCGH03814, CoLNCGH07477, CoLNCGH20812, CoLNCGH20811, CoLNCGH21237
Target CDS Gh_D05G102300.1, Gh_D06G044400.1, Gh_A06G045000.1, Gh_A05G215500.1, Gh_D05G232400.1, Gh_A03G044600.1, Gh_A03G044600.2, Gh_D03G152600.1, Gh_D03G152600.2, Gh_A05G090400.1
sORF
Reference
PMID Title
32074966Different MicroRNA Families Involved in Regulating High Temperature Stress Response during Cotton ( Gossypium hirsutum L.) Anther Development