miRNA info
CoNCRAtlas ID
CoMIRGH167
Mature miRNA sequence
UUCCACAGCUUUCUUGAACUU
Locus
D07:4552019-4552157(+)
Alignment
Displayed Location: D07:4552008-4552163 Strand: +
GAGAAGUCCUGAUCAUGCUUUUCCACAGCUUUCUUGAACUUUCUUUGAGUACUAACUCCGUCUUAAGGGAGAAAGAAAAAGAAAAAAACAUAACAUUUGCUAGCGCACCAUGGAAGCUCAAGAAAGCUGUGGGAAAACAUGAUGGCAAUUCAGGAC
(((((((((((((((((.(((((((((((((((((((.(((((..((........((((........))))..........................(((....))).)).))))).))))))))))))))))))).))))).......)))))))
....................UUCCACAGCUUUCUUGAACUU ................................................................................................................... ghi-miR396g
...................................................................................................................GCUCAAGAAAGCUGUGGGAAA .................... ghi-miR396g*
miRNA family
miR396
Expression profile
Tissue specificity index ovule: 0.0003; fiber: 0.4189; shoot apical: 0.0786; ovule and fiber: 0.0098; cotyledon: 0.003; cotton boll: 0.0657; leaf: 0.0032; anthers: 0.3629; hypocotyls: 0.0561; seedlings: 0.0015 | Tau: 0.8613
Tissue
Developmental Stage
Treatment
Additional Information Overlapping Elements:
sORF
CDS
>CoMIRGH167:85-138 ORF1_CoMIRGH167:84:137
TTGCTAGCGCACCATGGAAGCTCAAGAAAGCTGTGGGAAAACATGATGGCAATT
>CoMIRGH167:98-130 ORF2_CoMIRGH167:97:129
ATGGAAGCTCAAGAAAGCTGTGGGAAAACATGA
>CoMIRGH167:3-137 ORF3_CoMIRGH167:2:136
ATGCTTTTCCACAGCTTTCTTGAACTTTCTTTGAGTACTAACTCCGTCTTAAGGGAGAAAGAAAAAGAAA
AAAACATAACATTTGCTAGCGCACCATGGAAGCTCAAGAAAGCTGTGGGAAAACATGATGGCAAT
>CoMIRGH167:c84-40 ORF4_CoMIRGH167:83:39
ATGTTATGTTTTTTTCTTTTTCTTTCTCCCTTAAGACGGAGTTAG
>CoMIRGH167:c128-51 ORF5_CoMIRGH167:127:50
ATGTTTTCCCACAGCTTTCTTGAGCTTCCATGGTGCGCTAGCAAATGTTATGTTTTTTTCTTTTTCTTTC
TCCCTTAA
>CoMIRGH167:c136-2 ORF6_CoMIRGH167:135:1
TTGCCATCATGTTTTCCCACAGCTTTCTTGAGCTTCCATGGTGCGCTAGCAAATGTTATGTTTTTTTCTT
TTTCTTTCTCCCTTAAGACGGAGTTAGTACTCAAAGAAAGTTCAAGAAAGCTGTGGAAAAGCATG
Peptide
>ORF1_CoMIRGH167:84:137 unnamed protein product, partial
MLAHHGSSRKLWENMMAI
>ORF2_CoMIRGH167:97:129 unnamed protein product
MEAQESCGKT
>ORF3_CoMIRGH167:2:136 unnamed protein product, partial
MLFHSFLELSLSTNSVLREKEKEKNITFASAPWKLKKAVGKHDGN
>ORF4_CoMIRGH167:83:39 unnamed protein product
MLCFFLFLSPLRRS
>ORF5_CoMIRGH167:127:50 unnamed protein product
MFSHSFLELPWCASKCYVFFFFFLP
>ORF6_CoMIRGH167:135:1 unnamed protein product, partial
LPSCFPTAFLSFHGALANVMFFSFSFSLKTELVLKESSRKLWKSM
Check Peptide activity
Reference
Fatal error : Uncaught ValueError: array_combine(): Argument #1 ($keys) and argument #2 ($values) must have the same number of elements in /var/www/html/CoNCRAtlas/details_mirna.php:156
Stack trace:
#0 /var/www/html/CoNCRAtlas/details_mirna.php(156): array_combine(Array, Array)
#1 {main}
thrown in
/var/www/html/CoNCRAtlas/details_mirna.php on line
156