CoNCRAtlas ID
CoMIRGH166 Mature miRNA sequence
UGACAGAAGAGAGUGAGCAC Locus
D07:3203048-3203256(+) Alignment
Displayed Location: D07:3203067-3203191 Strand: +
UUAGAGAGGAAGGAGAGGUCUGACAGAAGAGAGUGAGCACACGCAGGCAGAUUGUAUGGAAGCCCAUACCUUUGCCCGCCGUGUGCUCACUUCUCUUCUGUCAGCUUAACAAUUCACUCUUUACA
.((((((((((....(((.(((((((((((((((((((((((((.((((((..((((((....)))))).)))))).).))))))))))).)))))))))))))))).....))).)))))))))
....................UGACAGAAGAGAGUGAGCAC ..................................................................................... ghi-miR156m
....................................................................................GCUCACUUCUCUUCUGUCAGC .................... ghi-miR156m*
miRNA family
miR156
Expression profile
Tissue specificity index ovule: 0.0031; fiber: 0.029; shoot apical: 0.0328; ovule and fiber: 0.0009; cotyledon: 0.0145; cotton boll: 0.0021; callus: 0.0176; leaf: 0.1609; anthers: 0.0174; hypocotyls: 0.7109; seedlings: 0.0106 | Tau: 0.9593
Tissue
Developmental Stage
Treatment
Additional Information Overlapping Elements:
sORF
CDS
>CoMIRGH166:70-207 ORF1_CoMIRGH166:69:206
TTGTATGGAAGCCCATACCTTTGCCCGCCGTGTGCTCACTTCTCTTCTGTCAGCTTAACAATTCACTCTT
TACACTTGTTTTTCCTCTCCTTTCTACATTTTCTGGAAACTTTCTACACCTTCTTCACCTACAGATCA
>CoMIRGH166:38-127 ORF2_CoMIRGH166:37:126
CTGACAGAAGAGAGTGAGCACACGCAGGCAGATTGTATGGAAGCCCATACCTTTGCCCGCCGTGTGCTCA
CTTCTCTTCTGTCAGCTTAA
>CoMIRGH166:90-206 ORF3_CoMIRGH166:89:205
TTGCCCGCCGTGTGCTCACTTCTCTTCTGTCAGCTTAACAATTCACTCTTTACACTTGTTTTTCCTCTCC
TTTCTACATTTTCTGGAAACTTTCTACACCTTCTTCACCTACAGATC
>CoMIRGH166:c85-2 ORF4_CoMIRGH166:84:1
ATGGGCTTCCATACAATCTGCCTGCGTGTGCTCACTCTCTTCTGTCAGACCTCTCCTTCCTCTCTAAATT
ACTCACTTTTTTTC
>CoMIRGH166:c68-3 ORF5_CoMIRGH166:67:2
CTGCCTGCGTGTGCTCACTCTCTTCTGTCAGACCTCTCCTTCCTCTCTAAATTACTCACTTTTTTT
Peptide
>ORF1_CoMIRGH166:69:206 unnamed protein product, partial
MYGSPYLCPPCAHFSSVSLTIHSLHLFFLSFLHFLETFYTFFTYRS
>ORF2_CoMIRGH166:37:126 unnamed protein product
MTEESEHTQADCMEAHTFARRVLTSLLSA
>ORF3_CoMIRGH166:89:205 unnamed protein product, partial
MPAVCSLLFCQLNNSLFTLVFPLLSTFSGNFLHLLHLQI
>ORF4_CoMIRGH166:84:1 unnamed protein product, partial
MGFHTICLRVLTLFCQTSPSSLNYSLFF
>ORF5_CoMIRGH166:67:2 unnamed protein product, partial
MPACAHSLLSDLSFLSKLLTFF
Check Peptide activity
Reference
PMID
Title Fatal error : Uncaught ValueError: array_combine(): Argument #1 ($keys) and argument #2 ($values) must have the same number of elements in /var/www/html/CoNCRAtlas/details_mirna.php:156
Stack trace:
#0 /var/www/html/CoNCRAtlas/details_mirna.php(156): array_combine(Array, Array)
#1 {main}
thrown in /var/www/html/CoNCRAtlas/details_mirna.php on line 156