CoNCRAtlas


CoNCRAtlas ID CoMIRGH165
Mature miRNA sequence GGAAUGUUGUCUGGCUCGAGG
Locus D07:22160250-22160465(-)
Alignment 
Displayed Location: D07:22160310-22160476 Strand: -
GCGGAGUAACCAAUUUGAGGGGAAUGUUGUCUGGCUCGAGGACACUUGUUUUUAAUCCAUUUCUUGCAUUACAAUUCAUUUAUGGAUCUGGUUAUUGCUGUAAUGGAUUGAGGCUGUACAAGGUCGUCGGACCAGGCUUCAUUCCCCCUAAUGCUUGCUCCUAUAUG
(((((((((.((..(((.((((((((..((((((.((((.(((.(((((((((((((((((....(((...(((((((....))))).)).....)))...))))))))))))....)))))))).)))).))))))..)))))))).))))).)))))))......
....................GGAAUGUUGUCUGGCUCGAGG.............................................................................................................................. ghi-miR166h
..............................................................................................................................UCGGACCAGGCUUCAUUCCCC.................... ghi-miR166h*
miRNA family miR166

Expression profile

Tissue specificity indexovule: 0.0562; fiber: 0.056; shoot apical: 0.0322; ovule and fiber: 0.0398; cotyledon: 0.165; cotton boll: 0.1315; callus: 0.0397; leaf: 0.329; anthers: 0.1259; seedlings: 0.0249 | Tau: 0.7961
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D072215381022161259-CoLNCGH07841
D072215763622161259-CoLNCGH07842
D072215850222161259-CoLNCGH07843
D072215851522161259-CoLNCGH07844
D072215852822161259-CoLNCGH07845
D072215857022161259-CoLNCGH07846
D072215857022161259-CoLNCGH07847
D072215857522161259-CoLNCGH07848
D072215858422161259-CoLNCGH07849
Target lncRNA CoLNCGH30892, CoLNCGH30892, CoLNCGH49394, CoLNCGH49394, CoLNCGH49395, CoLNCGH30891, CoLNCGH30891, CoLNCGH49395, CoLNCGH04460, CoLNCGH00373
Target CDS Gh_A05G118500.1, Gh_D05G130700.1, Gh_A08G089300.1, Gh_A13G137400.1, Gh_A07G025800.1, Gh_A12G088500.1, Gh_A05G090100.1, Gh_A06G103200.1, Gh_A08G225500.1, Gh_D05G049400.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)