CoNCRAtlas


CoNCRAtlas ID CoMIRGH161
Mature miRNA sequence AGAUAUUGGUGCGGUUCAAUU
Locus D06:55897761-55897848(-)
Alignment 
Displayed Location: D06:55897743-55897864 Strand: -
AAAAAGUAAGAAUGUUAACGAGAUAUUGGUGCGGUUCAAUUUAAAAGCAUCACUCUAAAGGUUAAGAGUUAUGUUAUUUGAUUGAGCCGUGCCAAUAUCACGUAAUAAUUAUACACCUUUGC
.....(((.((.(((((.((.((((((((((((((((((((.((.(((((.(((((........))))).))))).)).)))))))))))))))))))).))))))).)).)))((((((((
....................AGAUAUUGGUGCGGUUCAAUU................................................................................. ghi-miR171g
.................................................................................UUGAGCCGUGCCAAUAUCACG.................... ghi-miR171g*
miRNA family miR171

Expression profile

Tissue specificity indexovule: 0.0344; fiber: 0.0781; shoot apical: 0.1902; ovule and fiber: 0.0871; cotyledon: 0.0246; cotton boll: 0.0011; callus: 0.0034; leaf: 0.0673; anthers: 0.4968; hypocotyls: 0.0069; seedlings: 0.01 | Tau: 0.8987

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH11226, CoLNCGH17852, CoLNCGH26838, CoLNCGH51937, CoLNCGH02014, CoLNCGH23991, CoLNCGH36571, CoLNCGH36570, CoLNCGH29016, CoLNCGH36569
Target CDS Gh_A12G245400.1, Gh_D12G239800.1, Gh_D12G109400.1, Gh_A12G109700.1, Gh_D08G192900.1, Gh_A08G196200.1, Gh_A03G014800.1, Gh_D03G180900.1, Gh_A12G109800.1, Gh_D12G109500.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)