CoNCRAtlas


CoNCRAtlas ID CoMIRGH160
Mature miRNA sequence UGUCCUGCAAACUCACAAACC
Locus D06:44049893-44050072(+)
Alignment 
Displayed Location: D06:44049886-44050009 Strand: +
AAGCGAACAAAAUUAUUUGGCAUGUGGCUUUGCAUGACACUACUUUAAAUUAACAUUAUUAAAAACAAUGACAAUUAAAGUAGUGUCCUGCAAACUCACAAACCAAAUAAAACUCUCUCCAAUA
..(((((.....((((((((..(((((.((((((.(((((((((((((.....((((.........))))....))))))))))))).)))))).)))))..)))))))).....(((..((((
...................................................................................UGUCCUGCAAACUCACAAACC.................... ghi-miR1487
....................CAUGUGGCUUUGCAUGACACU................................................................................... ghi-miR1487*
miRNA family miR1487

Expression profile

Tissue specificity indexovule: 0.0076; fiber: 0.2626; shoot apical: 0.0007; ovule and fiber: 0.0016; cotyledon: 0.1431; cotton boll: 0.0061; callus: 0.3084; leaf: 0.1637; anthers: 0.004; hypocotyls: 0.0028; seedlings: 0.0995 | Tau: 0.7757

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH04084, CoLNCGH04082, CoLNCGH34362, CoLNCGH41711, CoLNCGH16831, CoLNCGH42329, CoLNCGH34662, CoLNCGH19875, CoLNCGH11731, CoLNCGH42328
Target CDS Gh_A09G179900.1, Gh_D09G083200.1, Gh_A09G088100.1, Gh_D05G364200.1, Gh_A11G176100.1, Gh_D11G177700.1, Gh_D12G114300.3, Gh_A12G114400.1, Gh_A12G114400.2, Gh_D12G114300.1
sORF
Reference
PMID Title
No references available