CoNCRAtlas


CoNCRAtlas ID CoMIRGH158
Mature miRNA sequence UGACAGAAGAGAGUGAGCAC
Locus D05:4897489-4897592(+)
Alignment 
Displayed Location: D05:4897480-4897601 Strand: +
CUUCUUUGGGACAUAGAAAUUGACAGAAGAGAGUGAGCACACAGAGGCACUUGUAUAAGGCUAUACUUUUGCUUUUGCGUGCUCACUUCUCUUUCUGUCAGUUUCCAGUGCCGGAAUUUGAU
......(((((((..(((((((((((((((((((((((((.((((((((...(((((....)))))...)))))))).)))))))).)))).)))))))))))))(((.(((((((..((((
....................UGACAGAAGAGAGUGAGCAC.................................................................................. ghi-miR156k
................................................................................GCUCACUUCUCUUUCUGUCAGU.................... ghi-miR156k*
miRNA family miR156

Expression profile

Tissue specificity indexfiber: 0.0045; shoot apical: 0.1648; cotyledon: 0.0063; cotton boll: 0.0001; callus: 0.0043; leaf: 0.1614; anthers: 0.007; hypocotyls: 0.6442; seedlings: 0.0074 | Tau: 0.9448

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH29713, CoLNCGH02111, CoLNCGH44410, CoLNCGH44411, CoLNCGH34498, CoLNCGH46300, CoLNCGH46298, CoLNCGH44573, CoLNCGH53080, CoLNCGH44572
Target CDS Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2
sORF
Reference
PMID Title
22160515Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity