CoNCRAtlas


CoNCRAtlas ID CoMIRGH158
Mature miRNA sequence UGACAGAAGAGAGUGAGCAC
Locus D05:4897489-4897592(+)
Alignment 
Displayed Location: D05:4897480-4897601 Strand: +
CUUCUUUGGGACAUAGAAAUUGACAGAAGAGAGUGAGCACACAGAGGCACUUGUAUAAGGCUAUACUUUUGCUUUUGCGUGCUCACUUCUCUUUCUGUCAGUUUCCAGUGCCGGAAUUUGAU
......(((((((..(((((((((((((((((((((((((.((((((((...(((((....)))))...)))))))).)))))))).)))).)))))))))))))(((.(((((((..((((
....................UGACAGAAGAGAGUGAGCAC.................................................................................. ghi-miR156k
................................................................................GCUCACUUCUCUUUCUGUCAGU.................... ghi-miR156k*
miRNA family miR156

Expression profile

Tissue specificity indexfiber: 0.0045; shoot apical: 0.1648; cotyledon: 0.0063; cotton boll: 0.0001; callus: 0.0043; leaf: 0.1614; anthers: 0.007; hypocotyls: 0.6442; seedlings: 0.0074 | Tau: 0.9448
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D0548969554902670+CoLNCGH02178
D0548971284902670+CoLNCGH02179
D0548971284902670+CoLNCGH02180
D0548971384902670+CoLNCGH02181
D0548971384902670+CoLNCGH02182
D0548971384902670+CoLNCGH02183
D0548971384902670+CoLNCGH02184
D0548971394902670+CoLNCGH02185
D0548971404902670+CoLNCGH02186
D0548971434902670+CoLNCGH02187
D0548971534902670+CoLNCGH02188
D0548969554902670+CoLNCGH02189
D0548974934902670+CoLNCGH02190
D0548970964902670+CoLNCGH02191
D0548970964902670+CoLNCGH02192
D0548971094902670+CoLNCGH02193
D0548971094902670+CoLNCGH02194
D0548971104902670+CoLNCGH02195
D0548971104902670+CoLNCGH02196
D0548971184902670+CoLNCGH02197
Target lncRNA CoLNCGH29713, CoLNCGH02111, CoLNCGH44410, CoLNCGH44411, CoLNCGH34498, CoLNCGH46300, CoLNCGH46298, CoLNCGH44573, CoLNCGH53080, CoLNCGH44572
Target CDS Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2
sORF
Reference
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PMID Title