| CoNCRAtlas ID | CoMIRGH157 |
|---|---|
| Mature miRNA sequence | UGACAGAAGAGAGUGAGCAC |
| Locus | D05:3432113-3432228(-) |
| Alignment | Displayed Location: D05:3432095-3432225 Strand: - GGGUUCUAGGGUAAGGGAGGUGACAGAAGAGAGUGAGCACACAGGGUACUUUCUUGCAUGCUUGAGCCUUUCAUGCUUGAAGCUCUGCGUGCUCACCCUCUAUCUGUCAUCCACUUUUCUCUCUCUCUCUC (((.....((((.((((((((((((((((((.((((((((.((((((...(((..(((((...........)))))..))))))))).)))))))).)))).))))))))..............)))))). ....................UGACAGAAGAGAGUGAGCAC........................................................................................... ghi-miR156j ..........................................................................................GCUCACCCUCUAUCUGUCAUC.................... ghi-miR156j* |
| miRNA family | miR156 |
Expression profile
| Tissue specificity index | shoot apical: 0.0036; cotyledon: 0.002; cotton boll: 0.0001; callus: 0.0049; leaf: 0.0817; anthers: 0.0005; hypocotyls: 0.906; seedlings: 0.0012 | Tau: 0.9896 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH29713, CoLNCGH02111, CoLNCGH02111, CoLNCGH34498, CoLNCGH44573, CoLNCGH53080, CoLNCGH44572, CoLNCGH05539, CoLNCGH28143, CoLNCGH28144 |
|---|
| Target CDS | Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |