CoNCRAtlas


CoNCRAtlas ID CoMIRGH157
Mature miRNA sequence UGACAGAAGAGAGUGAGCAC
Locus D05:3432113-3432228(-)
Alignment 
Displayed Location: D05:3432095-3432225 Strand: -
GGGUUCUAGGGUAAGGGAGGUGACAGAAGAGAGUGAGCACACAGGGUACUUUCUUGCAUGCUUGAGCCUUUCAUGCUUGAAGCUCUGCGUGCUCACCCUCUAUCUGUCAUCCACUUUUCUCUCUCUCUCUC
(((.....((((.((((((((((((((((((.((((((((.((((((...(((..(((((...........)))))..))))))))).)))))))).)))).))))))))..............)))))).
....................UGACAGAAGAGAGUGAGCAC........................................................................................... ghi-miR156j
..........................................................................................GCUCACCCUCUAUCUGUCAUC.................... ghi-miR156j*
miRNA family miR156

Expression profile

Tissue specificity indexshoot apical: 0.0036; cotyledon: 0.002; cotton boll: 0.0001; callus: 0.0049; leaf: 0.0817; anthers: 0.0005; hypocotyls: 0.906; seedlings: 0.0012 | Tau: 0.9896
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D0534309543432508-CoLNCGH02108
D0534309733432508-CoLNCGH02109
D0534309823432508-CoLNCGH02110
D0534312643432408+CoLNCGH02111
Target lncRNA CoLNCGH29713, CoLNCGH02111, CoLNCGH02111, CoLNCGH34498, CoLNCGH44573, CoLNCGH53080, CoLNCGH44572, CoLNCGH05539, CoLNCGH28143, CoLNCGH28144
Target CDS Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2
sORF
Reference
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PMID Title