CoNCRAtlas ID |
CoMIRGH156 |
Mature miRNA sequence |
UUGGCAUUCUGUCCACCUCC |
Locus |
D05:15939838-15940024(-) |
Alignment |
Displayed Location: D05:15939898-15940022 Strand: -
AGGGCUUCUUACAGAGUUUAUUGGCAUUCUGUCCACCUCCCCAUCAUGGAAAAAGUCCGUAUUUUUCCCCUCUGGUUUUUCAUGGAGGUGGGCAUACUGCCAACUGUGCUCUGUUGGCUUCUCUU
((((...((.(((((((.((((((((...((((((((((((((....(((((((.......)))))))....)))........)))))))))))...)))))).)).))))))).))...)))))
....................UUGGCAUUCUGUCCACCUCC..................................................................................... ghi-miR394
.....................................................................................AGGUGGGCAUACUGCCAACU.................... ghi-miR394*
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miRNA family |
miR394 |
Expression profile
Tissue specificity index | ovule: 0.4458; fiber: 0.3748; shoot apical: 0.0007; ovule and fiber: 0.0001; cotyledon: 0.0001; cotton boll: 0.0198; callus: 0.0475; leaf: 0.1106; anthers: 0.0004; hypocotyls: 0.0002 | Tau: 0.8757
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Tissue |
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Developmental Stage |
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Treatment |
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Additional Information
Overlapping Elements:
Chromosome | Start | End | Strand | Molecule |
D05 | 15937907 | 15940726 | - | CoLNCGH02967 |
sORF |
>CoMIRGH156:2-184 ORF1_CoMIRGH156:1:183
CTGGAAGTTCATCAGAGTGAGACGAAAGCTGGAAGAAATGCATCACAAGGATTTTACAAAGAGAAGCCAA
CAGAGCACAGTTGGCAGTATGCCCACCTCCATGAAAAACCAGAGGGGAAAAATACGGACTTTTTCCATGA
TGGGGAGGTGGACAGAATGCCAATAAACTCTGTAAGAAGCCCT
>CoMIRGH156:30-167 ORF2_CoMIRGH156:29:166
CTGGAAGAAATGCATCACAAGGATTTTACAAAGAGAAGCCAACAGAGCACAGTTGGCAGTATGCCCACCT
CCATGAAAAACCAGAGGGGAAAAATACGGACTTTTTCCATGATGGGGAGGTGGACAGAATGCCAATAA
>CoMIRGH156:c156-55 ORF3_CoMIRGH156:155:54
CTGTCCACCTCCCCATCATGGAAAAAGTCCGTATTTTTCCCCTCTGGTTTTTCATGGAGGTGGGCATACT
GCCAACTGTGCTCTGTTGGCTTCTCTTTGTAA
>CoMIRGH156:c164-3 ORF4_CoMIRGH156:163:2
TTGGCATTCTGTCCACCTCCCCATCATGGAAAAAGTCCGTATTTTTCCCCTCTGGTTTTTCATGGAGGTG
GGCATACTGCCAACTGTGCTCTGTTGGCTTCTCTTTGTAAAATCCTTGTGATGCATTTCTTCCAGCTTTC
GTCTCACTCTGATGAACTTCCA
>CoMIRGH156:c139-44 ORF5_CoMIRGH156:138:43
ATGGAAAAAGTCCGTATTTTTCCCCTCTGGTTTTTCATGGAGGTGGGCATACTGCCAACTGTGCTCTGTT
GGCTTCTCTTTGTAAAATCCTTGTGA
>ORF1_CoMIRGH156:1:183 unnamed protein product, partial
LEVHQSETKAGRNASQGFYKEKPTEHSWQYAHLHEKPEGKNTDFFHDGEVDRMPINSVRSP
>ORF2_CoMIRGH156:29:166 unnamed protein product
MEEMHHKDFTKRSQQSTVGSMPTSMKNQRGKIRTFSMMGRWTECQ
>ORF3_CoMIRGH156:155:54 unnamed protein product
MSTSPSWKKSVFFPSGFSWRWAYCQLCSVGFSL
>ORF4_CoMIRGH156:163:2 unnamed protein product, partial
MAFCPPPHHGKSPYFSPLVFHGGGHTANCALLASLCKILVMHFFQLSSHSDELP
>ORF5_CoMIRGH156:138:43 unnamed protein product
MEKVRIFPLWFFMEVGILPTVLCWLLFVKSL
Check Peptide activity
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Reference
PMID |
Title |
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25572837 | Small RNA sequencing identifies miRNA roles in ovule and fibre development |