CoNCRAtlas



CoNCRAtlas ID CoMIRGH156
Mature miRNA sequence UUGGCAUUCUGUCCACCUCC
Locus D05:15939838-15940024(-)
Alignment
Displayed Location: D05:15939898-15940022 Strand: -
AGGGCUUCUUACAGAGUUUAUUGGCAUUCUGUCCACCUCCCCAUCAUGGAAAAAGUCCGUAUUUUUCCCCUCUGGUUUUUCAUGGAGGUGGGCAUACUGCCAACUGUGCUCUGUUGGCUUCUCUU
((((...((.(((((((.((((((((...((((((((((((((....(((((((.......)))))))....)))........)))))))))))...)))))).)).))))))).))...)))))
....................UUGGCAUUCUGUCCACCUCC..................................................................................... ghi-miR394
.....................................................................................AGGUGGGCAUACUGCCAACU.................... ghi-miR394*
miRNA family miR394

Expression profile

Tissue specificity indexovule: 0.4458; fiber: 0.3748; shoot apical: 0.0007; ovule and fiber: 0.0001; cotyledon: 0.0001; cotton boll: 0.0198; callus: 0.0475; leaf: 0.1106; anthers: 0.0004; hypocotyls: 0.0002 | Tau: 0.8757
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D051593790715940726-CoLNCGH02967
Target lncRNA CoLNCGH17827, CoLNCGH25248, CoLNCGH25249, CoLNCGH50856, CoLNCGH25031, CoLNCGH25032, CoLNCGH50855, CoLNCGH34240, CoLNCGH09927, CoLNCGH09928
Target CDS Gh_A01G173000.1, Gh_D01G171000.1, Gh_A03G147900.1, Gh_D03G051600.1, Gh_A06G107900.1, Gh_A06G107900.2, Gh_D06G107800.1, Gh_D09G112500.1, Gh_A09G119400.1, Gh_D12G080200.1
sORF
Reference
PMID Title
25572837Small RNA sequencing identifies miRNA roles in ovule and fibre development