| CoNCRAtlas ID | CoMIRGH156 |
|---|---|
| Mature miRNA sequence | UUGGCAUUCUGUCCACCUCC |
| Locus | D05:15939838-15940024(-) |
| Alignment | Displayed Location: D05:15939898-15940022 Strand: - AGGGCUUCUUACAGAGUUUAUUGGCAUUCUGUCCACCUCCCCAUCAUGGAAAAAGUCCGUAUUUUUCCCCUCUGGUUUUUCAUGGAGGUGGGCAUACUGCCAACUGUGCUCUGUUGGCUUCUCUU ((((...((.(((((((.((((((((...((((((((((((((....(((((((.......)))))))....)))........)))))))))))...)))))).)).))))))).))...))))) ....................UUGGCAUUCUGUCCACCUCC..................................................................................... ghi-miR394 .....................................................................................AGGUGGGCAUACUGCCAACU.................... ghi-miR394* |
| miRNA family | miR394 |
Expression profile
| Tissue specificity index | ovule: 0.4458; fiber: 0.3748; shoot apical: 0.0007; ovule and fiber: 0.0001; cotyledon: 0.0001; cotton boll: 0.0198; callus: 0.0475; leaf: 0.1106; anthers: 0.0004; hypocotyls: 0.0002 | Tau: 0.8757 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH17827, CoLNCGH25248, CoLNCGH25249, CoLNCGH50856, CoLNCGH25031, CoLNCGH25032, CoLNCGH50855, CoLNCGH34240, CoLNCGH09927, CoLNCGH09928 |
|---|
| Target CDS | Gh_A01G173000.1, Gh_D01G171000.1, Gh_A03G147900.1, Gh_D03G051600.1, Gh_A06G107900.1, Gh_A06G107900.2, Gh_D06G107800.1, Gh_D09G112500.1, Gh_A09G119400.1, Gh_D12G080200.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 25572837 | Small RNA sequencing identifies miRNA roles in ovule and fibre development |