CoNCRAtlas


CoNCRAtlas ID CoMIRGH155
Mature miRNA sequence CGCCAAAGGAGAAUUGCCCUG
Locus D05:13448827-13448929(-)
Alignment 
Displayed Location: D05:13448810-13448945 Strand: -
AAGGGUAGAGAAGAAUAACGGUGCAAUUCUCCUUUGGCAGAUGAAAUAGUGCACAUUGCACACUUUGCAAUAGAAAAAAAUGUAGUGCAAUCAUCCGCCAAAGGAGAAUUGCCCUGCUAUUCAACUACUCUAUCAU
...(((((((..(((((.(((.((((((((((((((((.(((((....(((((...)))))...(((((.((.(......).)).)))))))))).)))))))))))))))).))).))))).....)))))))..
...............................................................................................CGCCAAAGGAGAAUUGCCCUG.................... ghi-miR399d
....................GUGCAAUUCUCCUUUGGCAGA............................................................................................... ghi-miR399d*
miRNA family miR399

Expression profile

Tissue specificity indexovule: 0.0049; fiber: 0.0489; shoot apical: 0.0471; ovule and fiber: 0.0266; cotyledon: 0.0407; cotton boll: 0.4897; callus: 0.0561; leaf: 0.1417; anthers: 0.0786; seedlings: 0.0656 | Tau: 0.8958

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH24864, CoLNCGH24865, CoLNCGH24866, CoLNCGH24867, CoLNCGH24868, CoLNCGH02796, CoLNCGH02797, CoLNCGH02798, CoLNCGH44413, CoLNCGH19198
Target CDS Gh_D04G001700.1, Gh_D04G001200.1, Gh_D04G000900.1, Gh_D04G001400.1, Gh_Contig00133G002100.1, Gh_A13G055300.1, Gh_D13G079100.1, Gh_A05G363500.1, Gh_A08G105700.1, Gh_D08G107400.1
sORF
Reference
PMID Title
22160515Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity