| CoNCRAtlas ID | CoMIRGH154 |
|---|---|
| Mature miRNA sequence | UGCCAAUGGAGAUUUGCCCCG |
| Locus | D05:13444572-13444655(+) |
| Alignment | Displayed Location: D05:13444553-13444675 Strand: + UCAGCUGCGGUUGCAUUACAGGGCAAAAUCUCCUCUGGCAGCCAGCCAUUGCCACUUCACCUAUGAAUUCUAGUGUGCUCUCUGCCAAUGGAGAUUUGCCCCGCAAUUCCACUGCAACAUUCA ).))))(((((.(.(((.(.(((((((.(((((..((((((..((((((((....((((....))))...))))).)))..))))))..)))))))))))).).))).).)))))........ ..................................................................................UGCCAAUGGAGAUUUGCCCCG.................... ghi-miR399c ....................GGGCAAAAUCUCCUCUGGCAGC................................................................................. ghi-miR399c* |
| miRNA family | miR399 |
Expression profile
| Tissue specificity index | ovule: 0.0075; fiber: 0.2539; shoot apical: 0.0221; ovule and fiber: 0.0481; cotyledon: 0.1004; cotton boll: 0.158; callus: 0.0027; leaf: 0.1253; anthers: 0.1023; hypocotyls: 0.0419; seedlings: 0.1378 | Tau: 0.7061 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH51698, CoLNCGH28866, CoLNCGH28867, CoLNCGH28868, CoLNCGH35727, CoLNCGH35726, CoLNCGH35725, CoLNCGH35724, CoLNCGH35723, CoLNCGH35722 |
|---|
| Target CDS | Gh_D05G345900.1, Gh_D13G232100.1, Gh_A13G228000.1, Gh_A08G246600.1, Gh_D08G238000.1, Gh_A04G049800.1, Gh_A01G052400.1, Gh_D01G048000.1, Gh_D02G031300.1, Gh_D09G016600.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |