CoNCRAtlas


CoNCRAtlas ID CoMIRGH152
Mature miRNA sequence CAGCCAAGGAUGACUUGCCGG
Locus D04:56170978-56171265(-)
Alignment 
Displayed Location: D04:56171030-56171229 Strand: -
UUAAAUGAGGUACAGUACUGCAGCCAAGGAUGACUUGCCGGCCGGCUAAGCUAUCUCUUCCAUAUAUUCUGUUAUUAUGUUCAUUUUAUUGCCAAAGAUUUGAACAAGACUGUAAUACAUAAAUGAAACAAAAACCUUUGGAGGAGAUGACAUCGAUCCGGCAAGUUGUCCUCGGCUACAAUUCUGUCUCAUUUUCACUU
..(((((((..((((...((.((((.(((((((((((((((.(((......(((((((((((.......((((.......((((((((((((...((.(((.....)))))))))))...))))))))))........)))))))))))...)))..))))))))))))))).)))).))...)))))))))))..)).)
....................CAGCCAAGGAUGACUUGCCGG............................................................................................................................................................... ghi-miR169b
...............................................................................................................................................................GGCAAGUUGUCCUCGGCUACA.................... ghi-miR169b*
miRNA family miR169

Expression profile

Tissue specificity indexovule: 0.0011; fiber: 0.0518; shoot apical: 0.2937; ovule and fiber: 0.0034; cotyledon: 0.11; cotton boll: 0.0036; callus: 0.0002; leaf: 0.0333; anthers: 0.1564; hypocotyls: 0.257; seedlings: 0.0894 | Tau: 0.7595

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH23852, CoLNCGH23852, CoLNCGH34206, CoLNCGH24405, CoLNCGH24408, CoLNCGH24409, CoLNCGH24410, CoLNCGH24411, CoLNCGH24412, CoLNCGH24413
Target CDS Gh_D03G101800.1, Gh_A03G094800.1, Gh_A02G022600.1, Gh_D08G100000.2, Gh_A08G100700.1, Gh_D08G100000.1, Gh_A10G062400.1, Gh_A08G218800.3, Gh_A08G218800.1, Gh_A08G218800.2
sORF
Reference
PMID Title
22160515Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity