CoNCRAtlas


CoNCRAtlas ID CoMIRGH151
Mature miRNA sequence CCAAAAUGGACUUAGUUACC
Locus D04:55868304-55868512(+)
Alignment 
Displayed Location: D04:55868285-55868453 Strand: +
ACUUUGGUACCUAAACUUGACAACUAUGUCCAUUUUGGUCCCUAAACUUGGUAAAUGUGAAAUUUUGAUAAUGUGGUAUUUUGAGAUUGUGCUGCAUGAUUAAAUCUUGAUGGAAUCCAAGUUCAGAGACCAAAAUGGACUUAGUUACCAAGUUUAGCUUAGUGGACAA
(((((((((((((((((((..(((((.(((((((((((((.((.(((((((....(((.((..((((((.(((((((((.........))))))))).))))))..)).)))....))))))).)).))))))))))))).)))))..))))))))((((..(......
.................................................................................................................................CCAAAAUGGACUUAGUUACC.................... ghi-miRN30
....................CAACUAUGUCCAUUUUGGUC................................................................................................................................. ghi-miRN30*
miRNA family miRN30

Expression profile

Tissue specificity indexovule: 0.0648; fiber: 0.0304; shoot apical: 0.0051; ovule and fiber: 0.0224; cotyledon: 0.2478; cotton boll: 0.0933; callus: 0.1428; leaf: 0.1502; anthers: 0.0326; hypocotyls: 0.0037; seedlings: 0.2071 | Tau: 0.6964

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH20712, CoLNCGH36597, CoLNCGH36597, CoLNCGH14554, CoLNCGH20745, CoLNCGH15406, CoLNCGH15405, CoLNCGH38331, CoLNCGH38332, CoLNCGH49329
Target CDS Gh_D13G101300.1, Gh_A08G020900.1, Gh_A08G020800.1, Gh_D08G019900.1, Gh_A13G103500.1, Gh_D13G077400.1, Gh_A11G011800.1, Gh_D11G011900.1, Gh_D13G166900.1, Gh_A07G127500.1
sORF
Reference
PMID Title
No references available