CoNCRAtlas


CoNCRAtlas ID CoMIRGH150
Mature miRNA sequence UCGGACCAGGCUUCAUUCCUC
Locus D04:55039863-55040114(-)
Alignment 
Displayed Location: D04:55039957-55040073 Strand: -
GAAAAUGGUAGAUUUUGAGGGGAAUGUUGGCUGGCUCGAAGCUUAAACAAAUACAGCUUCGGUUUCGGUUUAAGCUUCGGACCAGGCUUCAUUCCUCUCAAAAAUUUACGCAUGCAU
....((((((((((((((((((((((..(.((((.(((((((((((((.((..(......)..))..))))))))))))).)))).)..)))))))))).))))))))).)))...)
............................................................................UCGGACCAGGCUUCAUUCCUC.................... ghi-miR166g
....................GGAAUGUUGGCUGGCUCGAAG............................................................................ ghi-miR166g*
miRNA family miR166

Expression profile

Tissue specificity indexovule: 0.0105; fiber: 0.0067; shoot apical: 0.0135; ovule and fiber: 0.0046; cotyledon: 0.0358; cotton boll: 0.0023; callus: 0.0065; leaf: 0.0551; anthers: 0.8355; hypocotyls: 0.0076; seedlings: 0.0219 | Tau: 0.9803

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH30892, CoLNCGH49394, CoLNCGH30891, CoLNCGH49395, CoLNCGH30892, CoLNCGH49394, CoLNCGH49395, CoLNCGH30891, CoLNCGH04460, CoLNCGH02856
Target CDS Gh_A05G118500.1, Gh_D05G130700.1, Gh_A08G089300.1, Gh_A13G137400.1, Gh_A12G088500.1, Gh_A07G025800.1, Gh_A05G090100.1, Gh_A06G103200.1, Gh_A08G225500.1, Gh_D05G049400.1
sORF
Reference
PMID Title
No references available