CoNCRAtlas


CoNCRAtlas ID CoMIRGH149
Mature miRNA sequence UCUUUCCUACUCCUCCCAUUCC
Locus D04:48816855-48817126(-)
Alignment 
Displayed Location: D04:48816918-48817040 Strand: -
GAGUUGCCGGGAGUUUUUGGAAGUGGGAUGGGUGGAAAGAUUUGUAUUUUCUCUCUUGAUUUUCCAAGAAUGUAAAGCAAAUCUUUCCUACUCCUCCCAUUCCACUUAUUUCCAGUUCUUCCU
(((..((.((((((...(((((.(((((.((((((((((((((((.(((.(..(((((......)))))..).))))))))))))))).)))).))))))))))...)))))).)).))).))
.................................................................................UCUUUCCUACUCCUCCCAUUCC.................... ghi-miR482e
....................AAGUGGGAUGGGUGGAAAGAUU................................................................................. ghi-miR482e*
miRNA family miR482

Expression profile

Tissue specificity indexovule: 0.0804; fiber: 0.3238; shoot apical: 0.0135; ovule and fiber: 0.0138; cotyledon: 0.0766; cotton boll: 0.0388; callus: 0.013; leaf: 0.3044; anthers: 0.033; hypocotyls: 0.0065; seedlings: 0.0963 | Tau: 0.7912

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH23576, CoLNCGH23576, CoLNCGH06605, CoLNCGH06606, CoLNCGH06607, CoLNCGH02052, CoLNCGH00130, CoLNCGH45891, CoLNCGH45892, CoLNCGH45894
Target CDS Gh_A07G064400.1, Gh_A07G183600.1, Gh_A11G320300.1, Gh_D11G321700.1, Gh_D11G322000.1, Gh_D11G315600.1, Gh_A11G315300.1, Gh_D13G241000.1, Gh_A09G019200.1, Gh_A12G235000.1
sORF
Reference
PMID Title
25572837Small RNA sequencing identifies miRNA roles in ovule and fibre development