| CoNCRAtlas ID | CoMIRGH148 |
|---|---|
| Mature miRNA sequence | AGAAUCUUGAUGAUGCUGCAU |
| Locus | D04:40107454-40107549(+) |
| Alignment | Displayed Location: D04:40107440-40107568 Strand: + AUCAGUCGUUGUUUGCAAAUGUAGCAUCAUCAAGAUUCACAUCCAACGUCGUAUGUAUGUAUAUAUAUAUAUGUAUAGUUUGGGCCUGAGAAUCUUGAUGAUGCUGCAUUGGCAAUGAAUGGCUAUGGC )))(((((((..((((.(((((((((((((((((((((.((((((((..((((((((((....))))))))))....).)))))..)).))))))))))))))))))))).))))..)))))))..))) ........................................................................................AGAAUCUUGAUGAUGCUGCAU.................... ghi-miR172i ....................GUAGCAUCAUCAAGAUUCACA........................................................................................ ghi-miR172i* |
| miRNA family | miR172 |
Expression profile
| Tissue specificity index | ovule: 0.0016; fiber: 0.0301; shoot apical: 0.3108; cotyledon: 0.0007; cotton boll: 0.0105; leaf: 0.0259; anthers: 0.603; hypocotyls: 0.01; seedlings: 0.0073 | Tau: 0.9342 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH19317, CoLNCGH19318, CoLNCGH14894, CoLNCGH44731, CoLNCGH44732, CoLNCGH44733, CoLNCGH21180, CoLNCGH11963, CoLNCGH19317, CoLNCGH19318 |
|---|
| Target CDS | Gh_D03G149700.1, Gh_A08G001700.1, Gh_D08G002300.1, Gh_D10G236700.1, Gh_A01G243500.1, Gh_D01G237900.1, Gh_A05G087000.1, Gh_A03G047000.1, Gh_D05G092100.1, Gh_D05G098700.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |