| CoNCRAtlas ID | CoMIRGH146 |
|---|---|
| Mature miRNA sequence | UGAUUGAGCCGUGCCAAUAUC |
| Locus | D04:15536159-15536249(-) |
| Alignment | Displayed Location: D04:15536150-15536266 Strand: - UAAAAUAGUUGAAAAUUUGAUGUUGGCACGGUUCAAUCGGAUCAAAUCUCUCAGUGACUGGCUGAGUCCUUUAAUCUGAUUGAGCCGUGCCAAUAUCAGAGUUAGUCAGUUUAUCAC ((((....((((...(((((((((((((((((((((((((((.(((...((((((.....))))))...))).))))))))))))))))))))))))))).....))))))))))). ............................................................................UGAUUGAGCCGUGCCAAUAUC.................... ghi-miR171f ....................UGUUGGCACGGUUCAAUCGGA............................................................................ ghi-miR171f* |
| miRNA family | miR171 |
Expression profile
| Tissue specificity index | ovule: 0.0094; fiber: 0.0121; shoot apical: 0.0124; ovule and fiber: 0.0008; cotyledon: 0.0009; cotton boll: 0.0064; callus: 0.0016; leaf: 0.3068; anthers: 0.0442; hypocotyls: 0.6053 | Tau: 0.9348 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH17852, CoLNCGH26838, CoLNCGH36571, CoLNCGH36570, CoLNCGH29016, CoLNCGH36569, CoLNCGH36568, CoLNCGH36571, CoLNCGH36570, CoLNCGH36569 |
|---|
| Target CDS | Gh_D12G109400.1, Gh_A12G109700.1, Gh_A08G196200.1, Gh_D08G192900.1, Gh_A12G245400.1, Gh_D12G239800.1, Gh_A03G014800.1, Gh_D03G180900.1, Gh_A12G109800.1, Gh_D12G109500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |