CoNCRAtlas


CoNCRAtlas ID CoMIRGH144
Mature miRNA sequence ACUUUUGAACUGGAUUUGCCGA
Locus D03:52514173-52514299(+)
Alignment 
Displayed Location: D03:52514174-52514294 Strand: +
CUGUCUUAGUUUGCGUCUUGACUUUUGAACUGGAUUUGCCGACUUGAACUGCGUUGUUGAAGGUUUCCAAAACCCGAGCCUGCAAAUCCAGUCAAAAGUUAAAACCGGGCUGAGAUUUACG
..(((((((((((.((.(((((((((((.((((((((((.(.(((((((......)))...(((((...))))))))).).))))))))))))))))))))).))))))))))))))))))
....................ACUUUUGAACUGGAUUUGCCGA............................................................................... ghi-miR2949c
................................................................................UGCAAAUCCAGUCAAAAGUUA.................... ghi-miR2949c*
miRNA family miR2949

Expression profile

Tissue specificity indexovule: 0.3847; fiber: 0.118; shoot apical: 0.0237; ovule and fiber: 0.0311; cotyledon: 0.0317; cotton boll: 0.0429; callus: 0.0743; leaf: 0.1675; anthers: 0.0387; hypocotyls: 0.0391; seedlings: 0.0484 | Tau: 0.84
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH00459, CoLNCGH00458, CoLNCGH00457, CoLNCGH00456, CoLNCGH00455, CoLNCGH00453, CoLNCGH00452, CoLNCGH00451, CoLNCGH08741, CoLNCGH08748
Target CDS Gh_D03G186800.1, Gh_A03G012400.1, Gh_D03G186600.1, Gh_D03G186900.1, Gh_Contig00220G000500.1, Gh_D04G104200.1, Gh_A01G115500.1, Gh_D01G112600.1, Gh_D01G138400.1, Gh_A05G371300.2
sORF
Reference
PMID Title
32074966Different MicroRNA Families Involved in Regulating High Temperature Stress Response during Cotton ( Gossypium hirsutum L.) Anther Development