CoNCRAtlas


CoNCRAtlas ID CoMIRGH142
Mature miRNA sequence UGAACUGGGUUUGUUGGCUGC
Locus D03:52440467-52440671(-)
Alignment 
Displayed Location: D03:52440475-52440611 Strand: -
AGUAUUCCAGUAUCUUGAUUUGAACUGGGUUUGUUGGCUGCUGAUCUGCUUUUUUGAAGCAGAUAUCAAAUCUAGUUAAUAAAAACACUUUUCAGGAGCCAACAACAUCAGUUCUAACCAGGACUGGGCUGAGAUUU
(((...((((..(((((.((.(((((((..(((((((((.((((((((((((...)))))))))..........(((......)))......))).)))))))))..))))))).)).)))))))))))))))))))
....................UGAACUGGGUUUGUUGGCUGC................................................................................................ ghi-miR3476d
................................................................................................AGCCAACAACAUCAGUUCUAA.................... ghi-miR3476d*
miRNA family miR3476

Expression profile

Tissue specificity indexovule: 0.0218; fiber: 0.047; shoot apical: 0.2289; ovule and fiber: 0.0284; cotyledon: 0.1085; cotton boll: 0.0182; callus: 0.06; leaf: 0.0669; anthers: 0.0608; hypocotyls: 0.2928; seedlings: 0.0667 | Tau: 0.7585
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D035243873452441239-CoLNCGH00410
D035243879052441239-CoLNCGH00411
D035243880952441239-CoLNCGH00412
D035243881452441239-CoLNCGH00413
D035243884952441239-CoLNCGH00414
D035243884952441239-CoLNCGH00415
D035243884952441239-CoLNCGH00416
Target lncRNA CoLNCGH00644, CoLNCGH18488, CoLNCGH18486, CoLNCGH42389, CoLNCGH42397, CoLNCGH42398, CoLNCGH42399, CoLNCGH18488, CoLNCGH14019, CoLNCGH42402
Target CDS Gh_D03G185900.1, Gh_A03G013400.1, Gh_D03G185800.1, Gh_A03G013500.1, Gh_A04G136000.1, Gh_D04G175600.1, Gh_D04G175600.2, Gh_D06G193100.1, Gh_D06G029200.1, Gh_A06G029500.1
sORF
Reference
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PMID Title