CoNCRAtlas


CoNCRAtlas ID CoMIRGH141
Mature miRNA sequence UCGGACUGGAUUUGUUGACAA
Locus D03:52314796-52314889(-)
Alignment 
Displayed Location: D03:52314777-52314902 Strand: -
CAGUAUUCCGGUGUCUUGGAUCGGACUGGAUUUGUUGACAAAUGCAUUUUUGAAGCAGAUAACAAAUCUAAAAAUGCUUUUCCAGUCAACAAAUACCAGUUUGAGCUGAGAUUGGGCUGAGAUUCA
((((...(((..(((((((.((((((((((((((((((((((.((((((((.....((((.....)))))))))))).)))...)))))))))).))))))))).)))))))))))))))))))))
....................UCGGACUGGAUUUGUUGACAA..................................................................................... ghi-miR3476c
....................................................................................GUCAACAAAUACCAGUUUGAGC.................... ghi-miR3476c*
miRNA family miR3476

Expression profile

Tissue specificity indexovule: 0.0041; fiber: 0.0059; shoot apical: 0.0025; ovule and fiber: 0.0248; cotyledon: 0.1131; cotton boll: 0.0126; callus: 0.0005; leaf: 0.132; anthers: 0.0054; hypocotyls: 0.0092; seedlings: 0.6901 | Tau: 0.9551

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH00421, CoLNCGH00424, CoLNCGH20252, CoLNCGH26030, CoLNCGH43523, CoLNCGH22561, CoLNCGH04534, CoLNCGH04535, CoLNCGH06666, CoLNCGH06667
Target CDS Gh_D03G183100.1, Gh_D03G184300.1, Gh_D03G185700.1, Gh_A07G056700.1, Gh_D07G057200.1, Gh_A08G020600.1, Gh_D08G019800.1, Gh_A12G122400.1, Gh_D12G122200.1, Gh_A13G090600.1
sORF
Reference
PMID Title
32074966Different MicroRNA Families Involved in Regulating High Temperature Stress Response during Cotton ( Gossypium hirsutum L.) Anther Development