CoNCRAtlas


CoNCRAtlas ID CoMIRGH138
Mature miRNA sequence GGGAAUUAUAGCUGCUGAAGACUG
Locus D03:44365688-44365831(-)
Alignment 
Displayed Location: D03:44365699-44365833 Strand: -
CUCUUAAGUCGCUAAAGAGUGGGAAUUAUAGCUGCUGAAGACUGAGAGCGCAUUGUGUGGCACCUUGGGUUCAAACCACCUGGGGCUCUCACUCUUCAGCAGCCAUGGUUCUUGCCCUUCAGUGACUUGAGGUGC
(((..((((((((.(((.(((((((((((.(((((((((((.(((((((.(...((((((.(((...))))))...)))...).))))))).))))))))))).))))))))))).))).)))))))))))))))
....................GGGAAUUAUAGCUGCUGAAGACUG........................................................................................... ghi-miRN28
...........................................................................................CUCUUCAGCAGCCAUGGUUCUUGC.................... ghi-miRN28*
miRNA family miRN28

Expression profile

Tissue specificity indexovule: 0.0404; fiber: 0.0515; shoot apical: 0.3834; ovule and fiber: 0.0349; cotyledon: 0.0242; cotton boll: 0.0369; callus: 0.0152; leaf: 0.1436; anthers: 0.1386; hypocotyls: 0.1198; seedlings: 0.0115 | Tau: 0.8391
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D034436581044365890+helitron
Target lncRNA CoLNCGH40398, CoLNCGH03704, CoLNCGH03702, CoLNCGH03703, CoLNCGH03705, CoLNCGH11042, CoLNCGH38717, CoLNCGH10215, CoLNCGH10995, CoLNCGH10996
Target CDS Gh_A06G130400.1, Gh_D06G158400.1, Gh_A10G199800.1, Gh_A09G031200.1, Gh_D10G243100.1, Gh_A10G219800.1, Gh_D09G039500.2, Gh_A04G162600.1, Gh_A09G043800.1, Gh_D09G039500.1
sORF
Reference
PMID Title
0NA