| CoNCRAtlas ID | CoMIRGH136 |
|---|---|
| Mature miRNA sequence | UAUUGGCCUGGUUCACUCAGA |
| Locus | D03:294939-295032(-) |
| Alignment | Displayed Location: D03:294920-295049 Strand: - ACAUGAAAUAGUGACUUUGAUAUUGGCCUGGUUCACUCAGACAUGAAACAUAAAAGGCACUUUCUCUCUUCUUUAUUAUUAUUUUGGUCUGAUUGAGCCGUGCCAAUAUCUUAGUGCUCUUUCAUAUAUG ((((((((.(((.(((..(((((((((.(((((((.((((((..(((..((((((((.............)))).))))..)))..)))))).))))))).)))))))))..)))))).)))))....)) ....................UAUUGGCCUGGUUCACUCAGA......................................................................................... ghi-miR170 .........................................................................................UGAUUGAGCCGUGCCAAUAUC.................... ghi-miR170* |
| miRNA family | miR170 |
Expression profile
| Tissue specificity index | ovule: 0.0022; fiber: 0.0004; ovule and fiber: 0.002; cotyledon: 0.0816; cotton boll: 0.0592; callus: 0.001; leaf: 0.0537; anthers: 0.0001; seedlings: 0.7998 | Tau: 0.975 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH17852, CoLNCGH17852, CoLNCGH26838, CoLNCGH36571, CoLNCGH36570, CoLNCGH36569, CoLNCGH36568, CoLNCGH12978, CoLNCGH12977, CoLNCGH36567 |
|---|
| Target CDS | Gh_D12G109400.1, Gh_A12G109700.1, Gh_A08G196200.1, Gh_D08G192900.1, Gh_A12G245400.1, Gh_D12G239800.1, Gh_A03G014800.1, Gh_D03G180900.1, Gh_A12G109800.1, Gh_D12G109500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |