| CoNCRAtlas ID | CoMIRGH132 |
|---|---|
| Mature miRNA sequence | UUCCACGGCUUUCUUGAACUU |
| Locus | D02:65838486-65838578(+) |
| Alignment | Displayed Location: D02:65838472-65838596 Strand: + GGAGGUUCGUUUGCAUGCUUUUCCACGGCUUUCUUGAACUUCUUUUUCUCUCUUUGUGUUAGUAAAUGAAUUAAAGAGGAUGAAGGUCAAGAAAGCCGUGGGAAAACAUGAACGGAUUUUGUUUU )))((((((((..((((.(((((((((((((((((((...(((((.((.(((((((..(((.....)))..))))))))).)))))))))))))))))))))))).))))))))))))....))) ....................UUCCACGGCUUUCUUGAACUU.................................................................................... ghi-miR396f ....................................................................................GGUCAAGAAAGCCGUGGGAAA.................... ghi-miR396f* |
| miRNA family | miR396 |
Expression profile
| Tissue specificity index | ovule: 0.0702; fiber: 0.1187; shoot apical: 0.005; ovule and fiber: 0.0043; cotyledon: 0.3407; cotton boll: 0.0237; callus: 0.0078; leaf: 0.1401; anthers: 0.0957; seedlings: 0.1939 | Tau: 0.8065 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH34024, CoLNCGH20999, CoLNCGH46769, CoLNCGH46770, CoLNCGH52376, CoLNCGH20997, CoLNCGH20998, CoLNCGH34025, CoLNCGH34024, CoLNCGH10733 |
|---|
| Target CDS | Gh_D13G231200.1, Gh_A06G165400.1, Gh_A02G147700.1, Gh_A11G218000.1, Gh_A11G316200.1, Gh_D07G043100.1, Gh_A08G056400.1, Gh_A13G062800.1, Gh_A11G180600.1, Gh_A10G074200.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |