CoNCRAtlas


CoNCRAtlas ID CoMIRGH131
Mature miRNA sequence UUUCCUAUGCCCCCCAUUCCAC
Locus D02:63057325-63057568(+)
Alignment 
Displayed Location: D02:63057360-63057502 Strand: +
GAGAGUUACUGGAAAUUUUUGGAAGUGGGGUGCGAGGAAAGAUCAUUUCUCUUCUCUCUUAUAUGUACACACACACACAUACAAAGAGAUCAAACCAGAUCUUUCCUAUGCCCCCCAUUCCACUGAUUUCUAGUUCUUCUUCU
.((((..((((((((((..(((((.(((((.(((((((((((((........(((((.((.(((((..........))))).)))))))........)))))))))).))).))))))))))..))))))))))..)))))))
.....................................................................................................UUUCCUAUGCCCCCCAUUCCAC.................... ghi-miR482d
....................GGAAGUGGGGUGCGAGGAAAGA..................................................................................................... ghi-miR482d*
miRNA family miR482

Expression profile

Tissue specificity indexovule: 0.0604; fiber: 0.1059; shoot apical: 0.0486; ovule and fiber: 0.0244; cotyledon: 0.2194; cotton boll: 0.026; callus: 0.0223; leaf: 0.1319; anthers: 0.066; hypocotyls: 0.02; seedlings: 0.2752 | Tau: 0.7367

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH47744, CoLNCGH47743, CoLNCGH47742, CoLNCGH47741, CoLNCGH47740, CoLNCGH47739, CoLNCGH47737, CoLNCGH47738, CoLNCGH13551, CoLNCGH13552
Target CDS Gh_A11G043200.1, Gh_D10G100500.1, Gh_D09G087500.1, Gh_D06G204300.1, Gh_A06G201100.1, Gh_A10G080600.1, Gh_D10G264300.1, Gh_A08G164600.1, Gh_D08G163300.1, Gh_D08G163300.2
sORF
Reference
PMID Title
25572837Small RNA sequencing identifies miRNA roles in ovule and fibre development