CoNCRAtlas


CoNCRAtlas ID CoMIRGH130
Mature miRNA sequence UUGGACAGAGUAAUCACGGUCG
Locus D02:5144221-5144376(-)
Alignment 
Displayed Location: D02:5144205-5144322 Strand: -
UUCAGAUCCGGUCCAUUUGCUUGGACAGAGUAAUCACGGUCGAUUUCUGUUUAGCACAACAGGUUUCGUUUAAAUCAAUCGUGUUACUCCGUCCAAACAGAUGUUUUUGGAUCAUCGA
))..(((((((..((((((.((((((.((((((.(((((((((..((((((......))))))..))).........)))))))))))).)))))).))))))...)))))))...((
....................UUGGACAGAGUAAUCACGGUCG............................................................................ ghi-miR3954b
.............................................................................AUCGUGUUACUCCGUCCAAAC.................... ghi-miR3954b*
miRNA family miR3954

Expression profile

Tissue specificity indexovule: 0.0184; fiber: 0.0168; shoot apical: 0.3832; ovule and fiber: 0.4282; cotyledon: 0.0013; cotton boll: 0.0074; callus: 0.0127; leaf: 0.0672; anthers: 0.0632; seedlings: 0.0015 | Tau: 0.8665

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH12632, CoLNCGH12633, CoLNCGH12634, CoLNCGH52597, CoLNCGH00870, CoLNCGH42754, CoLNCGH00869, CoLNCGH00867, CoLNCGH00868, CoLNCGH41885
Target CDS Gh_A02G011500.1, Gh_D02G012500.1, Gh_A02G074300.1, Gh_A02G183500.1, Gh_D03G028800.1, Gh_D12G095500.1, Gh_D02G077400.1, Gh_D01G194200.1, Gh_A05G069500.1, Gh_A05G069500.2
sORF
Reference
PMID Title
25371507Deep sequencing reveals important roles of microRNAs in response to drought and salinity stress in cotton