CoNCRAtlas


CoNCRAtlas ID CoMIRGH129
Mature miRNA sequence AGGUCUUGAUCUUUAGCAGCGUUU
Locus D02:46421285-46421353(-)
Alignment 
Displayed Location: D02:46421276-46421372 Strand: -
UUUGUGAAAAGCGUCGCUAAAGGUCUUGAUCUUUAGCAGCGUUUGUGGGAAAAGAGCUGCUAAAGGUCUUGAUCUUUAGUGGCGUUUGCGAAAAAAG
(((.....(((((((((((((((((..(((((((((((((.(((.......))).)))))))))))))..))))))))))))))))).....)))))
....................AGGUCUUGAUCUUUAGCAGCGUUU..................................................... ghi-miRN25
.....................................................GAGCUGCUAAAGGUCUUGAUCUUU.................... ghi-miRN25*
miRNA family miRN25

Expression profile

Tissue specificity indexovule: 0.0525; fiber: 0.0445; shoot apical: 0.0144; ovule and fiber: 0.0135; cotyledon: 0.0094; cotton boll: 0.0562; callus: 0.6114; leaf: 0.1398; anthers: 0.0233; hypocotyls: 0.035 | Tau: 0.9364
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D024642106446421703-CACTA_TIR_transposon
Target lncRNA CoLNCGH33949, CoLNCGH33948, CoLNCGH03977, CoLNCGH32333, CoLNCGH31576, CoLNCGH31572, CoLNCGH31573, CoLNCGH31574, CoLNCGH31571, CoLNCGH31570
Target CDS Gh_A08G114900.1, Gh_A11G188000.1, Gh_D11G190300.1, Gh_D06G208800.1, Gh_D06G208800.2, Gh_A09G015800.1, Gh_D09G014600.1, Gh_A11G242000.1, Gh_A05G371700.1, Gh_A05G372100.1
sORF
Reference
PMID Title
0NA