CoNCRAtlas


CoNCRAtlas ID CoMIRGH127
Mature miRNA sequence UGUGUUCUCAGGUCGCCCCUG
Locus D02:1939139-1939250(+)
Alignment 
Displayed Location: D02:1939141-1939256 Strand: +
AGAGGUGGAGGAAUCCGACCGGGUCGACCUUAGAAUACAUGUGAUUGUUUUUCGAUUUCAAUAUGGUUCGUUUCAUGUGUUCUCAGGUCGCCCCUGUCGGAUUUUCAUUCAUCAUU
...((((((((((((((((.(((.((((((.((((((((((.(((.......(.((......)).)...))).)))))))))).)))))).))).))))))))))..))))))...
...........................................................................UGUGUUCUCAGGUCGCCCCUG.................... ghi-miR398c
....................GGGUCGACCUUAGAAUACAUG........................................................................... ghi-miR398c*
miRNA family miR398

Expression profile

Tissue specificity indexovule: 0.1013; fiber: 0.0452; shoot apical: 0.0104; cotyledon: 0.1977; cotton boll: 0.0158; callus: 0.164; leaf: 0.1242; anthers: 0.0036; seedlings: 0.3377 | Tau: 0.8039

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH51136, CoLNCGH51134, CoLNCGH51135, CoLNCGH51134, CoLNCGH51135, CoLNCGH51134, CoLNCGH51135, CoLNCGH51136, CoLNCGH51134, CoLNCGH51135
Target CDS Gh_A11G255000.1, Gh_D11G258500.1, Gh_D02G173200.1, Gh_A05G263900.1, Gh_D05G277800.1, Gh_D10G114500.1, Gh_A03G154100.4, Gh_A03G154100.1, Gh_A03G154100.2, Gh_A03G154100.3
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)