CoNCRAtlas


CoNCRAtlas ID CoMIRGH126
Mature miRNA sequence UGUGUUCUCAGGUCGCCCCUG
Locus D02:1936695-1936808(+)
Alignment 
Displayed Location: D02:1936692-1936805 Strand: +
AGAGGUGGAGGAAUCCGACUGGGUCGACCUUAGAACACGUGAUUGUUUUUUGAUUUCGAUAUGGUUCGUUUCAUGUGUUCUCAGGUCGCCCCUGUCGGGUUUCCUUUCAUCAUU
.((((((((((((((((((.(((.((((((.(((((((((((..............(((......)))..))))))))))).)))))).))).)))))).))))))....))))
.........................................................................UGUGUUCUCAGGUCGCCCCUG.................... ghi-miR398b
....................GGGUCGACCUUAGAACACGUG......................................................................... ghi-miR398b*
miRNA family miR398

Expression profile

Tissue specificity indexovule: 0.0054; fiber: 0.0215; shoot apical: 0.0004; ovule and fiber: 0.0004; cotyledon: 0.107; cotton boll: 0.0163; callus: 0.7279; leaf: 0.0458; anthers: 0.0016; hypocotyls: 0.0002; seedlings: 0.0736 | Tau: 0.9626

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH51136, CoLNCGH51136, CoLNCGH51134, CoLNCGH51135, CoLNCGH51134, CoLNCGH51135, CoLNCGH51134, CoLNCGH51135, CoLNCGH51134, CoLNCGH51135
Target CDS Gh_A11G255000.1, Gh_D11G258500.1, Gh_D02G173200.1, Gh_A05G263900.1, Gh_D05G277800.1, Gh_A03G154100.4, Gh_A03G154100.1, Gh_A03G154100.2, Gh_A03G154100.3, Gh_D12G217400.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)