CoNCRAtlas


CoNCRAtlas ID CoMIRGH125
Mature miRNA sequence CGCUAUCCAUCCUGAGUUUCA
Locus D01:64505087-64505264(+)
Alignment 
Displayed Location: D01:64505144-64505281 Strand: +
CCAGUAUGGAAGAAUCUGUUAAGCUCAGGAGGGAUAGCGCCAUGGAUGAUCCAUCUUUCAAGCUUUCAUGCAUGUAUGUUAUUUGAUCCUCAUAUAGCGCUAUCCAUCCUGAGUUUCAUCGGUUCUUCUUGCUUGCUG
..((((.(((((((((.((.((((((((((.(((((((((.(((((.((((.......((.((......)).))..........)))).)).))).))))))))).)))))))))).)).))))))))))))).((((
.................................................................................................CGCUAUCCAUCCUGAGUUUCA.................... ghi-miR390d
....................AAGCUCAGGAGGGAUAGCGCC................................................................................................. ghi-miR390d*
miRNA family miR390

Expression profile

Tissue specificity indexovule: 0.3832; fiber: 0.1187; shoot apical: 0.0488; ovule and fiber: 0.1147; cotyledon: 0.0006; cotton boll: 0.0755; callus: 0.2147; leaf: 0.0087; anthers: 0.0065; hypocotyls: 0.028; seedlings: 0.0007 | Tau: 0.8391

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH36101, CoLNCGH33835, CoLNCGH33834, CoLNCGH33833, CoLNCGH33832, CoLNCGH10511, CoLNCGH33831, CoLNCGH10510, CoLNCGH33830, CoLNCGH10509
Target CDS Gh_A10G130900.1, Gh_D10G143800.1, Gh_A11G274300.1, Gh_D11G273000.1, Gh_D07G206900.1, Gh_A11G349100.1, Gh_A11G283800.1, Gh_D11G283600.1, Gh_A11G274300.1, Gh_D11G273000.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)