CoNCRAtlas


CoNCRAtlas ID CoMIRGH121
Mature miRNA sequence UCGCUUCCCUAAUUUGGACG
Locus D01:13271283-13271420(-)
Alignment 
Displayed Location: D01:13271269-13271414 Strand: -
AUGGAACAUUUGGAAAAUUUGCCAAAUCAGGGAAGCGAAAGGUGUUUGCAGGCAGCAGAGUUUUGAGGGUAGUUUUCAUCAUCUCAUCACUCUACUCCCAGAUUAUUCGCUUCCCUAAUUUGGACGAUUUUACUUGCGUUCCUUCA
..(((((....((((((((..((((((.(((((((((((....(((((..((.((.(((((..(((((.............)))))..))))).)))))))))..))))))))))).))))))..)))))).))...))))).)))
..........................................................................................................UCGCUUCCCUAAUUUGGACG.................... ghi-miR1376
....................GCCAAAUCAGGGAAGCGAAA.......................................................................................................... ghi-miR1376*
miRNA family miR1376

Expression profile

Tissue specificity indexovule: 0.0296; fiber: 0.0263; shoot apical: 0.0271; ovule and fiber: 0.0385; cotyledon: 0.0367; cotton boll: 0.0086; callus: 0.5096; leaf: 0.1348; anthers: 0.1161; hypocotyls: 0.0188; seedlings: 0.054 | Tau: 0.9038

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH09240, CoLNCGH22354, CoLNCGH40248, CoLNCGH47592, CoLNCGH49264, CoLNCGH21697, CoLNCGH21654, CoLNCGH21656, CoLNCGH21653, CoLNCGH40055
Target CDS Gh_D02G225100.1, Gh_A04G167700.1, Gh_A10G054800.1, Gh_D10G068400.1, Gh_D05G368900.1, Gh_D08G174900.2, Gh_D08G174900.3, Gh_A03G114800.1, Gh_Contig00680G000600.1, Gh_A05G166900.1
sORF
Reference
PMID Title
No references available