CoNCRAtlas


CoNCRAtlas ID CoMIRGH119
Mature miRNA sequence UAGGUACUUGCAAGCUCACGGGAG
Locus A13:79483399-79483634(+)
Alignment 
Displayed Location: A13:79483426-79483589 Strand: +
GGCGUCUUGAUUGGUGGAGAUAGGUACUUGCAAGCUCACGGGAGAGGCGUUAGUGUUAUGCACAACUUGGUUGCAAGAUUCAUUCAACAUAAUUAAUAUUGGCACAACAUUGAUGCCUCUCUCAUGCGCUUGUAGGCACUUAUUUCCGCCAAUUGAGGCACUUU
((.((((((((((((((((((((((.(((((((((.((.((((((((((((((((((.(((.(((.(((((((...((.....))....)))))))..)))))).)))))))))))))))))).)).))))))))).)))))))))))))))))))))).))))
....................UAGGUACUUGCAAGCUCACGGGAG........................................................................................................................ ghi-miRN23
........................................................................................................................CUCAUGCGCUUGUAGGCACUUAUU.................... ghi-miRN23*
miRNA family miRN23

Expression profile

Tissue specificity indexovule: 0.0232; fiber: 0.0687; shoot apical: 0.4531; ovule and fiber: 0.1056; cotyledon: 0.0067; cotton boll: 0.0131; callus: 0.0347; leaf: 0.0734; anthers: 0.1234; hypocotyls: 0.0935; seedlings: 0.0043 | Tau: 0.8793

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH09940, CoLNCGH10637, CoLNCGH02048, CoLNCGH02049, CoLNCGH02050, CoLNCGH52129, CoLNCGH52130, CoLNCGH52131, CoLNCGH52132, CoLNCGH29335
Target CDS Gh_A03G057100.1, Gh_D03G139600.1, Gh_D08G238300.1, Gh_A01G129700.1, Gh_D01G128500.1, Gh_A01G252300.1, Gh_D01G246500.1, Gh_D01G246400.1, Gh_A10G125200.1, Gh_D02G205600.1
sORF
Reference
PMID Title
No references available