| CoNCRAtlas ID | CoMIRGH117 |
|---|---|
| Mature miRNA sequence | UGAAGCUGCCAGCAUGAUCUA |
| Locus | A13:69361470-69361568(-) |
| Alignment | Displayed Location: A13:69361451-69361575 Strand: - UAGCAUGCACCACAGAGAGUUGAAGCUGCCAGCAUGAUCUAGUUAACCACCCCUCCAUUUUUAAACCUUUCAGGGAGAGAGACUAGAUCAUUUGACAGCUUCAUCUGUCCAUGGCAGCAUGAUCA ...(((((.(((..((.((.((((((((.(((.(((((((((((......((((.................)))).....)))))))))))))).)))))))).)).))..)))..))))).... ....................UGAAGCUGCCAGCAUGAUCUA.................................................................................... ghi-miR167c .....................................................................................GAUCAUUUGACAGCUUCAUC.................... ghi-miR167c* |
| miRNA family | miR167 |
Expression profile
| Tissue specificity index | ovule: 0.1383; fiber: 0.0188; shoot apical: 0.0883; cotyledon: 0.0006; callus: 0.0098; leaf: 0.4307; anthers: 0.0512; hypocotyls: 0.2617; seedlings: 0.0005 | Tau: 0.8678 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH06214, CoLNCGH28913, CoLNCGH28914, CoLNCGH06213, CoLNCGH06553, CoLNCGH06554, CoLNCGH06555, CoLNCGH06556, CoLNCGH06557, CoLNCGH06558 |
|---|
| Target CDS | Gh_A06G203700.1, Gh_D06G208800.1, Gh_D06G208800.2, Gh_A08G138600.1, Gh_A03G013500.1, Gh_A05G340700.1, Gh_Contig00580G000700.1, Gh_Contig00580G000700.2, Gh_D03G048500.1, Gh_D05G219400.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |