CoNCRAtlas


CoNCRAtlas ID CoMIRGH117
Mature miRNA sequence UGAAGCUGCCAGCAUGAUCUA
Locus A13:69361470-69361568(-)
Alignment 
Displayed Location: A13:69361451-69361575 Strand: -
UAGCAUGCACCACAGAGAGUUGAAGCUGCCAGCAUGAUCUAGUUAACCACCCCUCCAUUUUUAAACCUUUCAGGGAGAGAGACUAGAUCAUUUGACAGCUUCAUCUGUCCAUGGCAGCAUGAUCA
...(((((.(((..((.((.((((((((.(((.(((((((((((......((((.................)))).....)))))))))))))).)))))))).)).))..)))..)))))....
....................UGAAGCUGCCAGCAUGAUCUA.................................................................................... ghi-miR167c
.....................................................................................GAUCAUUUGACAGCUUCAUC.................... ghi-miR167c*
miRNA family miR167

Expression profile

Tissue specificity indexovule: 0.1383; fiber: 0.0188; shoot apical: 0.0883; cotyledon: 0.0006; callus: 0.0098; leaf: 0.4307; anthers: 0.0512; hypocotyls: 0.2617; seedlings: 0.0005 | Tau: 0.8678
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A136936110369361704-CoLNCGH45608
Target lncRNA CoLNCGH06214, CoLNCGH28913, CoLNCGH28914, CoLNCGH06213, CoLNCGH06553, CoLNCGH06554, CoLNCGH06555, CoLNCGH06556, CoLNCGH06557, CoLNCGH06558
Target CDS Gh_A06G203700.1, Gh_D06G208800.1, Gh_D06G208800.2, Gh_A08G138600.1, Gh_A03G013500.1, Gh_A05G340700.1, Gh_Contig00580G000700.1, Gh_Contig00580G000700.2, Gh_D03G048500.1, Gh_D05G219400.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)