CoNCRAtlas


CoNCRAtlas ID CoMIRGH116
Mature miRNA sequence AGAAUCUUGAUGAUGCUGCAG
Locus A13:2205321-2205474(+)
Alignment 
Displayed Location: A13:2205315-2205489 Strand: +
AACAGUCAUUGUUUGCGGAUGGAGCAUCAUCAAGAUUCACGUAUCAUUCUUAGGGCAAUCGAAUAUUAAUGGUGAAGAUCAUCCUUUUUGCUUCACCAUACAUGUACCAAUAUUUAGUCCCUUGGAUAUAUAUGAGAAUCUUGAUGAUGCUGCAGCGGCAAUAAAUGCCUAAAUU
))))).((((..((((.(.((.((((((((((((((((.(((((...(((.((((..((.(((((((.(((((((((.............))))))))).........))))))).)))))).)))...))))).)))))))))))))))).)).).))))..))))))))))).
......................................................................................................................................AGAAUCUUGAUGAUGCUGCAG.................... ghi-miR172g
....................GGAGCAUCAUCAAGAUUCACG...................................................................................................................................... ghi-miR172g*
miRNA family miR172

Expression profile

Tissue specificity indexovule: 0.6733; fiber: 0.0125; ovule and fiber: 0.0045; cotton boll: 0.2334; anthers: 0.076; hypocotyls: 0.0002 | Tau: 0.9515
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A1322049982210199-CoLNCGH44731
A1322050642210199-CoLNCGH44732
A1322050682210199-CoLNCGH44733
Target lncRNA CoLNCGH19317, CoLNCGH19318, CoLNCGH19317, CoLNCGH19318, CoLNCGH14894, CoLNCGH14894, CoLNCGH44731, CoLNCGH44732, CoLNCGH44733, CoLNCGH44731
Target CDS Gh_D03G149700.1, Gh_A08G001700.1, Gh_D08G002300.1, Gh_A01G243500.1, Gh_D01G237900.1, Gh_D10G236700.1, Gh_A03G047000.1, Gh_A05G087000.1, Gh_D05G098700.1, Gh_A10G213200.1
sORF
Reference
PMID Title
25572837Small RNA sequencing identifies miRNA roles in ovule and fibre development