| CoNCRAtlas ID | CoMIRGH116 |
|---|---|
| Mature miRNA sequence | AGAAUCUUGAUGAUGCUGCAG |
| Locus | A13:2205321-2205474(+) |
| Alignment | Displayed Location: A13:2205315-2205489 Strand: + AACAGUCAUUGUUUGCGGAUGGAGCAUCAUCAAGAUUCACGUAUCAUUCUUAGGGCAAUCGAAUAUUAAUGGUGAAGAUCAUCCUUUUUGCUUCACCAUACAUGUACCAAUAUUUAGUCCCUUGGAUAUAUAUGAGAAUCUUGAUGAUGCUGCAGCGGCAAUAAAUGCCUAAAUU ))))).((((..((((.(.((.((((((((((((((((.(((((...(((.((((..((.(((((((.(((((((((.............))))))))).........))))))).)))))).)))...))))).)))))))))))))))).)).).))))..))))))))))). ......................................................................................................................................AGAAUCUUGAUGAUGCUGCAG.................... ghi-miR172g ....................GGAGCAUCAUCAAGAUUCACG...................................................................................................................................... ghi-miR172g* |
| miRNA family | miR172 |
Expression profile
| Tissue specificity index | ovule: 0.6733; fiber: 0.0125; ovule and fiber: 0.0045; cotton boll: 0.2334; anthers: 0.076; hypocotyls: 0.0002 | Tau: 0.9515 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH19317, CoLNCGH19318, CoLNCGH19317, CoLNCGH19318, CoLNCGH14894, CoLNCGH14894, CoLNCGH44731, CoLNCGH44732, CoLNCGH44733, CoLNCGH44731 |
|---|
| Target CDS | Gh_D03G149700.1, Gh_A08G001700.1, Gh_D08G002300.1, Gh_D10G236700.1, Gh_A01G243500.1, Gh_D01G237900.1, Gh_A03G047000.1, Gh_A05G087000.1, Gh_D05G098700.1, Gh_A10G213200.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 25572837 | Small RNA sequencing identifies miRNA roles in ovule and fibre development |